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Human Practices

Built with biology. Guided by humanity.


At Sterosaurus, Human Practices wasn't an afterthought - it was embedded throughout our project. By engaging diverse voices, reflecting critically, and integrating feedback into every stage, we worked to ensure our design is responsible, responsive, and good for the world.

As iGEMers, we believe that great synthetic biology is about more than lab work alone. It's about building projects that are responsible, reflective, and good for the world. From the very beginning, our Human Practices efforts were integrated into our design-build-test-learn cycle, creating feedback loops between our ideas and the communities they affect.

Guided by conversations, background research, and iterative reflection, we continually asked not just can we do this, but should we, why, and for whom.

Our work emphasizes local context, inclusivity, and responsiveness: we explored diverse perspectives, considered social, environmental, and ethical implications, and used what we learned to inform the direction of our project.

By documenting this process carefully, we aim to provide an inspiring example for future iGEM teams and contribute to a culture of thoughtful, integrated Human Practices across the competition.

45+ stakeholder groups reached, 100+ individuals consulted, and insights integrated from start to end.

IRUS: A framework to help iGEM teams see beyond the bench.

In our pursuit of effective and truly integrated Human Practices, we recognized the need for a framework that could keep our work intentional, reflective, and adaptable throughout the entire project cycle.

Last year, our team members at McMasterU developed a prototype framework, and this year the Sterosaurus team has refined and expanded it to better serve our goals.

Our inspiration comes from McMaster University's legacy as the birthplace of problem-based learning (PBL) and inquiry-driven education. Just as PBL encourages students to investigate real world challenges through iteration and collaboration, IRUS helps us navigate Human Practices with the same spirit of inquiry and integration.

We examined existing frameworks such as AREA (Anticipate, Reflect, Engage, Act) and ELSA (Ethical, Legal, and Social Aspects), both highlighted in iGEM projects like Exeter 2018. While valuable, these models did not fully meet the specific needs of our project. We sought a framework that emphasized closing the loop between community voices, background research, and our own design choices.

That is where IRUS comes in; our way of helping iGEM teams see beyond the bench.

It stands for:

  • Inquire: Identify the questions or decisions in our project that require stakeholder, community, or expert input.
  • Reach Out: Engage with relevant communities and experts to gather perspectives.
  • Understand: Combine stakeholder feedback with literature, background research, and team reflection.
  • Synthesize: Integrate these insights back into the project design, making tangible changes and documenting the process.
IRUS Framework

By using these four stages, IRUS ensures that our Human Practices work is not only thoughtful but also truly integrated. It provides a clear structure for us, while offering a flexible, adaptable tool that future iGEM teams can use or build upon in their own contexts.

On this page, you'll see how we put IRUS into action. Follow along as each step shapes and reshapes our project!

The Dawn of Sterosaurus: Where our Design Journey Began

NOVEMBER 2024 - MARCH 2025

Every iGEM project starts with a fundamental question: what matters most to our community, and how can synthetic biology play a role?

To answer this, we began with open-ended team brainstorming. Then we turned outward, engaging with community groups and digging into local research, before returning to the table to synthesize what we learned.

1.1 Team Brainstorm: Phase One

To begin, we gathered as a team and posed a manageable, but still open-ended question: what comes to mind when you think of Hamilton?

With members from different faculties, years of study, and lengths of time spent in the city, our answers reflected a wide range of perspectives. Some thought of the natural landmarks, like the escarpment, trails, and waterfalls that shape the city's geography.

Others immediately mentioned the university community, a hub of learning and innovation. For many, Hamilton's industrial legacy stood out: steel factories, smokestacks, and the lasting imprint of pollution on the city's image. Still others raised pressing social issues like homelessness, housing insecurity, and the challenges visible downtown.

This exercise gave us a first snapshot of Hamilton as both a place of opportunity and a city grappling with complex environmental and social realities.

“For me, Hamilton means community, but also the challenges we see downtown every day. It feels like a place of possibility.”

Aiman Dhiloon, Human Practices Lead

Team Brainstorm

1.2 What does it mean to be Good for the World?

1.2.1: Local Students, Local Problems - A Conversation with Kerry Yang, AVP Municipal Affairs

To begin our community outreach, we connected with Kerry Yang, the Associate Vice President of Municipal Affairs at the McMaster Students Union. Kerry works closely with city leaders and community partners, and brings a wealth of experience in bridging the gap between students and local change.

In our conversation, Kerry encouraged us to look beyond campus and actively immerse ourselves in Hamilton. She emphasized that the city has a wealth of stories, challenges, and opportunities waiting to be explored, and that we as students, by engaging with our community, have the potential to create real change.

Her advice became a guiding principle for us: to make a project with Hamilton, not just in Hamilton.

Kerry Yang

"Students have so much potential to create change when they step outside campus walls and into the city. Hamilton is full of stories and opportunities. The more you explore and connect, the more meaningful your work will become." - Kerry Yang, Associate Vice President of Municipal Affairs, McMaster Students Union

With these insights in mind, we set out to prioritize community values first in our project design. Our main objective became addressing local issues while creating a broader impact for the world. This focus aligns with iGEM's principle of “local people solving local problems”, as a natural intersection of both iGEM's global vision and Hamilton's local needs.

1.2.2: Being “Good for the World”

To gain a deeper understanding of what it means to be "good for the world," we engaged in a reflective discussion with Dr. Kimberly Dej, the Vice-Provost of Teaching and Learning at McMaster University and a Paul R. MacPherson Teaching Fellow at the MacPherson Institute for Leadership, Innovation, and Excellence in Teaching.

Dr. Kimberly Dej

During our discussions, Dr. Dej shared her insights on the significance of engagement and its broader implications. Dr. Dej also highlighted the necessity of including community dialogue and practicing good science communication.

“When I think of something that is good for the world, I think of ways people can work together to create a better society that includes respect for our environment, all ages, and all religions. If we create the best solutions in the world, but people are suspicious or scared of them, then it's pointless.”

This emphasizes the need for our project not only to be scientifically sound but also to foster trust and understanding within the communities we aim to serve. By integrating these insights into our project, we committed to ensuring that our work was not only innovative but also socially responsible, creating solutions that are genuinely beneficial to society as a whole.

1.3 Establishing Local Priorities

Together, the following experiences (from speaking with municipal leaders and student innovators, to engaging with interdisciplinary programs and community showcases) formed the foundation of our Human Practices journey.

Rather than brainstorming in isolation, we immersed ourselves in Hamilton's civic and social ecosystem, listening to those who knew the city best. The priorities we heard again and again became guideposts for our own brainstorming, ensuring that Sterosaurus began not just as a technical idea, but as a project rooted in real community needs and aspirations.

This phase marked the heart of the Reach Out stage of our IRUS framework, as we sought out diverse voices to ground our design process in lived realities.

1.3.1: BASEF - Connecting with Hamilton's Future Innovators

Following Kerry's advice, we visited the Bay Area Science and Engineering Fair (BASEF), an annual celebration of student STEM projects in Hamilton. BASEF inspires young people to see science and engineering as tools to change the world, offering a platform for them to showcase creativity, problem-solving, and innovation.

At the fair, we spoke with high school students about their projects and their visions for how science can create a better future. Their enthusiasm reminded us that innovation is not limited to labs or universities - it thrives wherever curiosity meets purpose. This encounter pushed us to carry that same spirit of openness and imagination into our own project brainstorming.

1.3.2: MacChangers Showcase

We also attended the MacChangers Project Showcase, a co-curricular program where McMaster students collaborate across disciplines to design solutions to Hamilton's most pressing challenges. Each year, teams are assigned a community-defined question and work with mentors and partners to develop practical proposals, culminating in a final showcase.

MacChangers 1
MacChangers 2

The program's focus areas (built environment and infrastructure, clean & green initiatives, strong communities and culture, and healthy & safe cities) were directly aligned with Our Future Hamilton, a 25-year vision shaped by the input of over 55 000 local residents.

At the showcase, we saw how student teams turned these broad challenge areas into actionable ideas. For example, some projects focused on reducing barriers to green transportation, while others explored new approaches to housing or community health. The diversity of solutions reminded us that impactful design comes from meeting community identified needs, not imposing them.

Through conversations with MacChangers participants, we also picked up valuable tips on how to engage meaningfully with community partners: listen first, identify shared goals, and refine ideas collaboratively. Inspired by this, we decided to examine the Our Future Hamilton report directly to anchor our own brainstorming in the long-term aspirations of our city.

By drawing from the MacChangers model, we were reminded that synthetic biology, like any tool, creates the most impact when guided by local priorities and co-created with the communities it seeks to serve.

1.3.4: Community Engagement in the Classroom

As part of our effort to ground our project design in Hamilton's realities, our Human Practices team was invited to present in a Community Engagement thesis course at McMaster. This course brings together upper-year students from across faculties who spend a semester immersing themselves in the city, studying its history, engaging directly with local groups, and developing a deep understanding of Hamilton's social, environmental, and civic challenges.

We introduced the principles of synthetic biology and explained how our field might address local issues. In turn, these students highlighted how essential it would be for us to align with city council priorities and to work alongside established community organizations rather than in isolation.

Through this dialogue, we were reminded that our Human Practices work isn't just about outreach, but about learning from those already embedded in the community. Their perspectives onhomelessness, industry, and environmental protection reframed our brainstorming, ensuring our project design considered the lived realities of Hamiltonians as much as its technical feasibility.

1.3.5: Community Engagement Showcase - CityLAB Hamilton

To continue exploring Hamilton's priorities, we attended the CityLAB Hamilton Project Showcase, an annual event where students, faculty, community members, researchers, and city councillors gather to celebrate co-created projects. CityLAB itself is a partnership between McMaster, Mohawk, Redeemer, and the City of Hamilton, designed to bring together academic expertise and civic needs through collaborative, semester-long projects.

At the showcase, we saw initiatives such as re-imagining the Steelport lands (a hub of industrial work in Hamilton), creating open streets for pedestrians and cyclists, and community placemaking with art installations.

What stood out to us was not only the creativity of the solutions, but also the process: each project had been developed in direct alignment with local and council priorities, ensuring relevance and accountability to the city.

Engaging with presenters and attendees gave us inspiration for potential focus areas in our own work. We also saw firsthand how community members, researchers, and city officials can come together to shape shared visions for Hamilton's future, a model of co-creation we aimed to emulate in our Human Practices process.

1.4 Our City, Our Project: Grounding Our Project in Hamilton

After immersing ourselves in community conversations, we moved into the Understand stage of IRUS.

Here, we returned to the desk to integrate what we had heard with a deep dive into Hamilton's history, demographics, and socioeconomic realities. This phase helped us connect lived perspectives with data and research, grounding our project in the realities of the city we call home.

1.4.1 A City Shaped by Industry

Across Hamilton's history, one theme has remained constant: the dual legacy of its steel industry. Nicknames like Steeltown, The Hammer, and even Canada's Armpit capture the city's industrial pride as well as its polluted reputation. While steel production powered Hamilton's growth, it also left an environmental footprint that continues today. In 2021, Hamilton produced 10.2 million tonnes of CO₂ - nearly 20% of emissions in the entire Greater Toronto-Hamilton Area, despite being only 8% of its population (Hamilton City Magazine, 2023).

This duality - pride in industrial heritage, but a desire to shed the “dirty city” image - emerged again and again in both our community dialogues and our research. It reinforced for us that any locally rooted project would need to grapple with Hamilton's industrial legacy and environmental future side by side.

1.4.2 Homelessness & Housing Insecurity

Homelessness in Hamilton has increased by 31% since 2021, with over 1,500 people considered actively unhoused by the end of 2022 (3). Chronic homelessness, addiction, and mental health needs are rising, and housing costs continue to outpace incomes. The City’s Housing and Homelessness Action Plan (4) aims to shift from reactive, shelter-based responses toward preventive, equity-driven solutions, but reports from 2023 and 2024 show demand still exceeds capacity.

For us, this emphasized that good for the world in Hamilton cannot mean only environmental sustainability - it must also speak to social justice and equity.

1.4.3 An Aging Population

Finally, Hamilton is aging rapidly. Nearly one in five residents is over the age of 65, a proportion expected to grow significantly by 2036. The city's Age-Friendly Community Plan (2021–2026)outlines goals to improve housing, transportation, health services, and civic engagement for older adults, with attention to equity, diversity, and dementia-friendly design. The 2023 progress report highlights inclusive initiatives, from securing new housing units to expanding volunteer medical driving programs.

This demographic shift underscored the need for solutions that could contribute to supporting seniors and vulnerable populations in tangible ways.

1.4.4 Our Future Hamilton: A 25-Year Vision

Throughout our community outreach, from the MacChangers showcase to our conversations in the Community Engagement course and the CityLAB Hamilton Project Showcase, one resource was repeatedly emphasized: Our Future Hamilton, the city's 25-year community vision.

Developed with input from nearly 55 000 residents, the plan lays out six overarching priorities: community engagement and participation, economic prosperity, public health and safety, environmental responsibility, built infrastructure, and culture and social diversity.

By turning directly to this vision, we were able to connect what we had heard in person with a city-wide framework for long-term change. Our Future Hamilton not only echoed the themes we had already encountered (sustainability, economic growth, equity, and civic well-being) but also organized them into a roadmap for the decades ahead.

Grounding our brainstorming in this vision ensured that Sterosaurus was aligned not just with the conversations of today, but also with Hamilton's aspirations for the future.

1.5 Living the City: An Ethnography of Hamilton

Guided by the advice of Randy Kay, a City Building instructor in McMaster's Department of Community Engagement, we set out to conduct a city walk and ethnographic study of Hamilton.

Ethnography is an anthropological tool that involves immersing oneself in a community to observe and reflect on its daily realities, culture, and identity. For us, this meant treating the city itself as a living text to learn from.

Ethnography 1
Ethnography 2
Ethnography 3
Ethnography 4
Ethnography 5
Ethnography 6

On our walk, we paid attention to the details that shape Hamilton's character: its streets, design, people, and sensory experiences. Graffiti conveyed frustration and discontent, often directed at rising costs of living and polluting steel companies.

The presence of unhoused individuals was a stark reminder of the city's pressing social challenges. At the same time, storefronts and murals proudly embraced Hamilton's nicknames - Steeltown and The Hammer - nods to its industrial heritage and the deep sense of pride tied to it.

While we could not speak to every Hamiltonian, the walk allowed us to connect with the city on its own terms. Experiencing Hamilton firsthand gave us insights that reports and statistics alone could not provide: a city proud of its roots, yet wrestling with the burdens of its past and present.

“Walking through Hamilton gave me a whole new perspective. Instead of just reading about the city, I could see its challenges and its pride right in front of me - it made everything we'd been discussing feel real.”

- Mahi Prajapati, HP Team Member

This ethnographic exercise deepened our Understand phase of IRUS, helping us weave together community voices, city planning documents, and lived urban experience into one coherent foundation for our brainstorming.

1.6 Iterative Brainstorming: Synthesizing our Knowledge

Armed with what we had learned, from our own team reflections, community conversations, ethnographic exploration, and deep dives into reports and local priorities, we returned to the brainstorming table. This time, our discussions were far more focused, grounded in the real needs and aspirations of Hamilton.

Across every source of input, two themes stood out as undeniable priorities: environmental sustainability and economic growth.

These appeared again and again, whether in council reports, grassroots conversations, or student-led initiatives. Alongside them, we also recognized pressing social challenges: homelessness, an aging population, and the need to better support equity-deserving groups.

By synthesizing these recurring insights, we began to refine our project directions, shifting from open-ended curiosity to a more intentional search for solutions where synthetic biology could make the greatest difference. This iterative cycle of reflection and return set the stage for the next phase of Sterosaurus: moving from broad themes to a specific, actionable idea.

Charting the Course: Our Original Project Design

MARCH 2025

After engaging deeply with our community and local context, we entered the next phase: turning broad priorities into a clear project direction. Numerous IRUS cycles created an iterative process of outreach, research, and integration of perspectives that helped us create our preliminary project design.

In this section, we outline why CO₂ emissions emerged as our central challenge, why we chose a circular economy approach to guide our design, and why algae stood out as the most socially responsible and future-oriented platform for our work.

2.1 Tackling CO₂ Emissions

Inquire:

What should the initial focus of our project be?

From the very beginning, one theme kept resurfacing across our IRUS cycle: the environment. From our earliest outreach, one theme towered above the rest: the environment. Every community voice we engaged with - from municipal leaders to grassroots activists, from students to city planners - returned to the urgent need for sustainable solutions.

Hamilton's industrial legacy had already surfaced in our earlier reflections, where we saw how the city's steel industry remains both a source of civic pride and environmental concern. Building on this, our deeper engagement underscored the urgency of the issue. We encountered frustration written directly on the city's walls in graffiti critical of Stelco and industry emissions, and we heard the same sentiments echoed in conversations with residents.

Reach Out:

When we connected with Hamilton 350, a grassroots climate action group, the urgency of tackling carbon dioxide emissions was clear. Our contact, Dan, cautioned us not to mistake incremental changes (like steel companies moving from coal to natural gas) as real progress.

Hamilton 350

CO₂ is especially insidious, he explained, because it lingers in the atmosphere far longer than other pollutants. He also stressed that climate change is not experienced equally: unhoused individuals, seniors, and other marginalized groups in Hamilton are already among the most vulnerable to its effects.

Understand:

We paired these insights with our own research to place Hamilton's challenges in both local and global context.

  • Global perspective: Atmospheric CO₂ has already surpassed the “safe” limit of 350 ppm, reaching a record 427 ppm in May 2024 (Climate Change, 2024). This steady climb drives extreme weather events, rising sea levels, and food insecurity. Anthropogenic emissions since the industrial revolution have increased atmospheric CO₂ by 50%, far outpacing natural changes over millennia (NASA).
  • National perspective: Canada's 2030 Emissions Reduction Plan pledges to cut greenhouse gas emissions by 45% below 2005 levels by 2030, on the way to net-zero by 2050. Yet progress has been uneven: in 2024, national emissions still sat around 693 megatonnes of CO₂, leaving a steep gap to meet these targets (Government of Canada, 2023).
  • Air quality has suffered accordingly: smog advisories in Hamilton have increased by 15% over the last decade, and in 2022 alone, more than 500 residents were hospitalized for respiratory illnesses linked to air pollution. These numbers translate directly into human impacts, especially for already vulnerable groups.

Synthesize:

Together, this cycle of listening and learning sharpened our project focus. Addressing CO₂ emissions is not only Hamilton's most visible environmental challenge but also a social imperative tied to health, equity, and long-term sustainability.

2.2 Choosing a Circular Economy Approach

Alongside sustainability, another value that emerged consistently in our outreach was economic growth. Hamilton has always been a city of makers, from steel to manufacturing. We wanted our project to reflect that legacy while reimagining it for a greener future.

Inquire:

How can synthetic biology transform one of Hamilton’s greatest liabilities into an opportunity for good?

Reach Out:

To explore this idea, we connected with the Hamilton Industrial Environmental Association (HIEA), a network of local companies committed to clean and green practices in manufacturing.

HIEA

HIEA emphasized the importance of a circular economy - reusing and repurposing waste streams to create new value - and told us that many companies in their network are eager to collaborate on innovative climate solutions.

Their advice pushed us to think not only about capturing carbon, but also about what we could make from it that would support local industry while advancing sustainability.

Understand:

We built on this advice with research into circular economy and bioeconomy frameworks. Today's global economy largely operates linearly: resources are extracted, transformed into products, and eventually discarded as waste (11). This system strains natural resources, exacerbates waste management issues, and increases greenhouse gas emissions.

A circular economy, in contrast, seeks to minimize waste and maximize efficiency by reusing, recycling, and regenerating materials. The bioeconomy builds on this model by leveraging biological resources to sustainably produce food, materials, and energy.

Synthesize:

By embedding our project in circular economy principles, we aimed to transform emissions into something useful, aligning with both Hamilton's history as a manufacturing hub and its future as a cleaner, greener city. This dual focus on sustainability and economic opportunity set the stage for our next design choice: identifying the right system to carry out this transformation.

2.3 Microalgae: Our Socially Responsible Chassis

Inquire:

What is a responsible system for us to choose as a chassis?

When it came time to choose the right system for Sterosaurus, we worked closely with our lab and design teams but kept our Human Practices insights at the center. We needed an approach that could reduce emissions without creating new social or environmental burdens. We were interested in the applications of microalgae, as our design teams had explored its potential to use CO2 as a fuel source.

Reach Out:

To explore our options, our team met with Dr. Lukas Dahlin, a researcher at National Renewable Energy Library in Denver, USA, who is working on developing universal genetic tools for microalgae, and applications therein.

Dr. Dahlin

He emphasized that microalgae represent a highly promising frontier for sustainable bioproduction. He highlighted their unique characteristics as photosynthetic biocatalysts: the ability to capture CO₂ directly, grow in saline water on non-arable land, and achieve year-round cultivation. Compared to terrestrial crops, they can reach higher biofuel and biochemical yields without competing with agriculture.

Importantly, Dr. Dahlin noted that these properties make microalgae not just academically interesting, but realistic candidates for industrial applications, with the potential to advance both environmental sustainability and biomanufacturing.

Understand:

Unlike many traditional biomanufacturing platforms, algae:

  • Directly recycle CO₂, turning emissions into useful products rather than relying on sugar-based feedstocks or fossil inputs.
  • Avoid competing with food systems. Unlike yeast or bacteria, algae do not consume valuable crops, sugars, or arable land needed for human nutrition.
  • Minimize agricultural strain. Algae thrive on sunlight, water, and waste CO₂, growing in closed systems without draining farmland or freshwater meant for communities.
  • Offer scalable sustainability. Photobioreactors can be placed alongside emission sources, capturing carbon at the site and reducing transport or infrastructure burdens.

Synthesize:

By choosing algae, Sterosaurus reflects not only a technical solution but also a socially responsible one - a design that captures emissions, preserves resources, and embodies the values of sustainability and equity we set out to uphold.




By centering sustainability and economic growth (two values echoed across every conversation and report we encountered), we charted a clear path forward.

Sterosaurus would aim not only to capture CO₂, but to give it new life, transforming Hamilton’s greatest challenge into an opportunity for innovation, equity, and a greener future driven by algae.

Tracks in the Sand: Testing Our First Steps

Before moving too far ahead, we needed to test whether our idea was truly viable. That meant stepping back to ask if our proposed design made sense, scientifically, socially, and economically, and seeking outside perspectives to ground our direction.

3.1 Scientific Validation: Expert Advice

Inquire:

Is our initial idea scientifically feasible for a student iGEM team to pursue?

3.1.1 The Canadian Alternative Protein Symposium

Reach Out:

As part of our scientific validation, members of our team attended the Canadian Alternative Protein Symposium at the University of Toronto. This national gathering brought together researchers, entrepreneurs, and industry leaders focused on advancing plant-based, fermentation-based, and cellular agriculture technologies.

CAPS

At the time, our team was exploring the possibility of producing proteins using algae as a biomanufacturing chassis. We saw potential applications in therapeutics, agriculture, and food security, all socially relevant causes with clear demand.

However, through conversations at the symposium, we gained a new perspective on the challenges facing protein-focused projects. Industry leaders emphasized the long development timelines for alternative protein innovation, from proof-of-concept to regulatory approval and consumer acceptance. They also highlighted that protein-based solutions are entering increasingly crowded and competitive markets, which require significant scale, capital, and infrastructure to succeed. These insights prompted us to critically reflect on whether proteins were the right target for a student-led project with a one-year design cycle.

3.1.2 A Conversation with Dr. Pradhan

Reach Out:

While our lab teams were researching other potential products we could produce, we consulted with Dr. Pradhan, a faculty mentor with expertise in metabolic engineering. Dr. Pradhan recognized the challenges of proteins and suggested that we instead consider sterols, a class of high-value compounds with diverse applications in pharmaceuticals, nutraceuticals, and agriculture.

Unlike proteins, sterols offered shorter pathways to proof-of-concept and clearer opportunities for demonstrating value in the context of climate-conscious biomanufacturing.

Understand:

When we stepped back to compare proteins and sterols, what stood out most were the social and market considerations. Sterols offered:

  • Achievability: While proteins often demand long timelines before they can reach proof-of-concept, sterols could be pursued within iGEM's one-year cycle. That balance of feasibility and impact was critical for us.
  • Environmental Sustainability: Current sterol sources (like corn oil, canola, and tall oils) rely heavily on agriculture and forestry, which use land, water, and time-intensive cultivation. Algae-based sterols bypass these constraints: they grow rapidly, thrive on non-arable land, and use water unsuitable for drinking or farming. By producing sterols in algae, we could reduce pressure on food systems and forest resources, tackling both emissions and sustainability at once.
  • Scalability and Timeliness: Because sterols are already widely regulated and accepted in multiple industries, their pathway to market is shorter compared to novel therapeutics like proteins. This meant our project had the potential to create earlier, tangible impact while still aligning with global sustainability goals.
  • Versatility from a Single Molecule: The same molecule might be relevant as a nutritional supplement, a therapeutic precursor, or a functional ingredient in consumer goods.
  • Community-Informed Flexibility: Because sterols can branch into multiple applications, they gave us the freedom to stay responsive to community priorities. Instead of locking ourselves into one application early, we could evaluate which end-use would be most relevant for Hamilton and beyond.

For more on the technical feasibility of sterol production in algae, we point readers to our Wet Lab and Project Design pages. Here, our focus was on identifying a product that reflected both local priorities and broader societal needs, and sterols offered exactly that.

Synthesize:

Through this process of listening, researching, and reflecting, our team made a pivotal decision: to shift our focus away from proteins and toward sterols. This change aligned with the scientific realities of our capacity as a student team while remaining true to the social and economic values we had identified earlier.

3.2 Social Validation: Guided by Local Voices

Inquire:

Do members of our local community see value in our circular economy and CO₂ driven design, and do they believe these align with local needs and priorities in a responsible way?

3.2.1 Community-Engaged Research Day

Reach Out:

Our first opportunity to share our concept with the wider Hamilton community came at Community-Engaged Research Day, hosted by McMaster's Office of Community Engagement. This downtown event brought together students, researchers, and community partners to highlight projects grounded in local needs.

CERD

We presented a poster on our original idea: using synthetic biology to recycle carbon dioxide emissions into high-value products. Many attendees did not have a science background, yet they quickly connected with the problem we were addressing. Hamilton's industrial emissions are a visible challenge in the city, and residents were enthusiastic about the possibility of transforming CO₂ from waste into something valuable.

CERD2

Community members asked thoughtful questions about feasibility, safety, and scale, while also voicing excitement about the economic potential of greener manufacturing. Several emphasized how important it would be for projects like ours to create benefits for Hamilton directly, by contributing to local industries and strengthening the economy alongside environmental improvements.

This feedback confirmed that even outside of scientific circles, our project resonated with Hamiltonians as both relevant and aspirational: a solution rooted in the city's industrial reality but aimed at a cleaner, more sustainable future.

3.2.2 Dialogue Event - Revitalizing Hamilton's Future

Dialogue Event 1

Next, our team attended a community dialogue event that brought together council members, industry leaders, and community members of all ages to discuss the long-term redevelopment of the Stelco industrial lands. The conversation centered on how this iconic industrial site could be reimagined into meaningful public spaces and a driver of future prosperity for Hamilton.

Listening to these discussions, we heard a recurring theme: the community wants to honour Hamilton's steelmaking past, while building new opportunities that extend beyond its “dirty industry” reputation. Participants spoke passionately about the need for environmental sustainability to be at the heart of redevelopment, ensuring that Hamilton's growth no longer comes at the cost of its air, water, and climate.

For us, this dialogue reinforced the value of our project direction. By working to capture CO₂ emissions and channel them into new products, we could directly align with Hamilton's aspirations: preserving industrial heritage while contributing to a cleaner economy that supports both local pride and environmental responsibility.

3.2.3 Precautionary Steps with MacDivest

MacDivest

We also engaged with MacDivest, a student-led organization at McMaster University that has spent over a decade lobbying for the university to divest from fossil fuels.

Speaking with Evan, one of their representatives, gave us a candid perspective on how climate solutions are often perceived by grassroots advocates. Evan expressed frustration with “transition” solutions, such as shifting from coal to natural gas, that are framed as victories but still perpetuate reliance on fossil fuels.

In his words, “natural gas is a non-starter,” and industries should instead be moving toward truly sustainable, electric-powered alternatives, even if they are costlier.

At the same time, Evan acknowledged an important reality: some degree of carbon emissions will remain unavoidable in hard-to-abate industries like steel or brewing. For that reason, he saw potential in our project as a complementary solution, tackling the emissions that are most difficult to eliminate.

This conversation challenged us to think critically about our project's role in the broader climate landscape. It reminded us that while carbon capture alone cannot replace systemic transitions, it may still serve as an important piece of a multifaceted response to climate change.

3.2.4 Hamilton Youth Town Hall

We also took part in the Hamilton Youth Town Hall at City Hall, an event that brought together young changemakers from across the city alongside municipal officials. The dialogue centered on issues shaping Hamilton's future, mental health, housing, economy, and the environment.

Community

In the discussion groups, we shared our perspective and introduced our project idea as part of the broader conversation. The response from other youth participants was encouraging: they saw its relevance to Hamilton's key challenges, particularly climate change and sustainable economic growth. Some also urged us to think about how our work could ripple outward, intersecting with priorities like affordable housing, job creation, and equity for marginalized groups.

These conversations showed us how strongly Hamilton's youth connect climate action with broader social justice, and they pushed us to keep widening our lens when considering impact.

Understand:

Across all four events, one theme was clear: our idea resonated strongly with Hamiltonians. Community members, council leaders, and youth alike emphasized that projects tackling carbon emissions align closely with local priorities around climate change, environmental sustainability, and economic growth. They appreciated that our concept sought not only to address Hamilton's industrial legacy but also to create future opportunities.

At the same time, we also heard words of caution. Groups like MacDivest reminded us that any solution must be mindful of not simply entrenching current industrial practices. Their feedback encouraged us to think carefully about whether our work would genuinely drive progress toward sustainability rather than being a stopgap. Importantly, this wasn't framed as opposition to our project. It was a push to stay grounded, reflective, and intentional.

Synthesize:

Taken together, the feedback gave us confidence that pursuing a CO₂ recycling approach was socially supported and locally relevant. Community members saw clear value in the idea, while those with concerns urged us to keep equity and long-term sustainability in mind.

3.3 Economic/Industry Validation: Pitch Competitions

Inquire:

Is our project commercially viable, and could it realistically create impact beyond the lab?

Reach Out:

We explored entrepreneurship as a way to pressure-test the economic and marketing viability of our algal biomanufacturing platform. A core premise of our project, and the idea that has driven our team for the past two years, is the scalability and versatility of our modular system. While the specific product may evolve, the sustainable principles, circular business model, and innovative algae engineering technologies remain.

3.3.1 The Forge Consultation

Our first step was a consultation with Mariya Leslie from McMaster University's start-up incubator, The Forge, where we received invaluable guidance on managing intellectual property, developing market strategy, team development, and project evolution.

Forge

She helped us recognize that our project holds strong commercialization potential: not only could we patent both our engineered strains and the bioreactor designs, but we could also leverage government incentives such as carbon credits to increase the financial impact of our project. Being the first of its kind in Canada, our platform could play a critical role in bringing pharmaceutical manufacturing back home.

3.3.2 LEAD: Vision Ventures Pitch

LEAD: Vision Ventures was a competition hosted by Toronto Metropolitan University and focused on groundbreaking solutions for social change. This pitch forced us to view our project through the lens of social entrepreneurship, emphasizing how it could benefit Canadian communities. In the presentation, we focused on outlining the circular economy aspects of our platform and its potential to enable sustainable pharmaceutical production.

To support our argument, we developed a preliminary economic model and a full business plan for our prototype, which we originally presented under the name ChloroNova. The judges appreciated the novelty of our concept but found the pitch too technical, advising us to simplify our explanation and provide stronger evidence to build credibility.

Our team was awarded Second Place at the competition, because the judges recognized the social impact and relevance of our project to the Hamilton region and Canadian landscape.

Chloronova Business Model

3.3.3 BioTEC Pitch Competition

Based on this feedback, we refined our presentation for the next pitch at the BioTEC Pitch Competition hosted at University of Waterloo.

This time, we avoided deep scientific jargon and concentrated on clearly explaining the process and market potential. The judges recognized the value in our idea, but encouraged us to highlight our team's expertise and the external verification of our work to strengthen credibility. They also recommended gathering more data, both biological and financial, to demonstrate the system's feasibility.

Our team was awarded the third place prize, with the judges commending our innovation & encouraging us to move forward with our development.

Understand:

These engagements made it clear that while our concept resonated with entrepreneurial audiences, we needed to communicate more accessibly, strengthen credibility, and collect additional data. They also showed us that framing our platform as both environmentally and economically impactful significantly enhanced its appeal.

Synthesize:

Through these exercises, we validated that our project has strong potential in the economic sphere. The feedback we received continues to guide how we frame our work for broader audiences, reminding us that economic feasibility, credibility, and clear storytelling are just as important as technical innovation for achieving real-world impact.




Through scientific, social, and economic validation, we pressure-tested our initial concept from every angle. Expert feedback ensured our designs were feasible, community voices confirmed alignment with local priorities, and entrepreneurial exploration demonstrated real-world potential.

These perspectives gave us the confidence to move forward, with Human Practices guiding our next steps at every stage

The Fossil Record: Evolving Sterosaurus’ Vision

APRIL - SEPTEMBER 2025

Just as dinosaurs evolved to survive in shifting ecosystems, our project underwent its own series of adaptations. The Sterosaurus journey was not linear: it moved through cycles of exploration, feedback, and reflection as we tested different product applications and aligned them with both scientific feasibility and community needs. Each pivot, from vitamin D, to skincare, to therapeutics, was not a failure, but an evolution, bringing us closer to a form that could truly thrive in Hamilton’s landscape and beyond.

4.1 Product Selection & End-Stage Evolution

One IRUS cycle that continued throughout the Sterosaurus journey was determining what product our system should create, and what end-stage application would be most meaningful. This decision required balancing scientific feasibility with social relevance, ensuring that whatever path we pursued would remain aligned with community needs and Human Practices values.

4.1.1 Evaluating Ergosterol & Vitamin D as a Target

Inquire

What product should we make, and which end-stage applications would provide the greatest benefit to our community and beyond?

Working with our lab and design team, we originally selectedergosterol as our product of interest, due to its broad range of potential end stage applications. Although the finer technical details are discussed in our Wet Lab pages, our human practices focus was to assess whether targeting ergosterol would resonate socially and strategically in our community context.

One compelling angle we originally explored was vitamin D production. Ergosterol can be converted via UV exposure intovitamin D₂ (ergocalciferol) (12). This has potential relevance in Canada, where vitamin D levels tend to drop significantly through the winter months: the proportion of Canadians with vitamin D below 30 nmol/L more than doubles during winter (13). Given limited sunlight, especially in Hamilton’s winters, supplements or dietary sources become more essential.

From a social perspective, this possibility connected with several local and global themes:

  • Vegan / plant-based needs: Current vitamin D supplements are most often animal-derived, limiting accessibility for vegan/vegetarian communities, which are prevalent in canada. A national study observed that about 5% of Canadians report following a plant-based dietary practice (vegetarian, vegan, etc.) in 2015 (14).
  • Sustainability & food systems: Current sources of vegetarian supplements (e.g. from plant oils, fungi and yeast) often depend on agricultural land, inputs, water, and long cultivation times. Ergosterol from algae could reduce pressure on food systems.
  • Health & equity: If local communities face vitamin D insufficiency, a more sustainable, locally engineered source could help increase access and reduce costs of supplements.

Reach Out

As we explored ergosterol’s potential for vitamin D production, we consulted Dr. Kevin De France, an Assistant Professor of Chemical Engineering at Queen’s University. His lab develops sustainable materials from biomass. His work is highly interdisciplinary, bridging biotechnology, chemistry, and engineering, with an emphasis on stakeholder engagement and sustainability. We first connected with him at the Alt Protein Symposium in Toronto.

KEVINDEFRANCE

Dr. De France explained that for human health products, regulators and companies will focus less on where a compound comes from and more on purity, reproducibility, and sterility. He noted that for a molecule like vitamin D, consumers rarely care about the source - marketing might sway perception, but competitive advantage will almost always come from cost and quality, not novelty.

While he agreed that vitamin D deficiency is a pressing health issue in Canada, especially in winter months, they cautioned that this pathway might not be the most impactful direction for our team because it would not be profitable enough to garner the industrial support needed to scale up.

He also outlined how his own projects engage stakeholders: from farmers and processors (Canola Council of Canada) to government funders, industry partners (bioplastics, supplements), and the public. For us, he suggested that supplement companies would only be interested if we offered a clear competitive edge: cheaper, purer, or more consistent products. On the environmental side, he stressed that waste streams are unpredictable, so any process we develop must tolerate input variability.

Understand

From this conversation, we learned:

  • Vitamin D₂ is not inherently attractive unless we can offer major cost or purity advantages.
  • Stakeholder interest (supplement companies, government, industry) depends on clear commercial or policy advantages.
  • Effective public communication requires relatable framing, not jargon-heavy science.

Synthesize

This advice challenged us to reflect critically and helped us pivot away from vitamin D₂ as a primary product angle, confirming that its market is crowded and cost-driven. We recognized that our system could make a broader impact by choosing a different end application.

Instead, we leaned toward sterols with clearer therapeutic or industrial pathways. We also began integrating stakeholder mapping and soft communication strategies into our HP plan, recognizing that success requires not only technical proof-of-concept but also credible framing for industry and the public.

4.1.2 Exploring Alternative Ergosterol Products

Inquire

What alternative ergosterol applications may be most useful?

Reach Out

Exploring the Spectrum of Applications

Our Human Practices team worked alongside our design and wet lab teams to conduct a deep dive into the many possible applications of sterols. Ergosterol and its derivatives offered remarkable flexibility, spanning uses from health to conservation to consumer products.

We mapped out several possibilities:

  • Vitamin D₂: Attractive for Canadian winters and vegetarian accessibility, but existing supplements already meet much of this demand. Vitamin D₂ is not inherently attractive unless we can offer major cost or purity advantages.
  • Therapeutics: Including progesterone for contraceptives and HRT, or cortisone for inflammation. While compelling, we anticipated complex regulatory pathways and longer timelines for impact.
  • Conservation feedstocks: Sterols are essential in fish and insect diets, with potential applications in aquaculture and pollinator health, though less connected to Hamilton’s priorities.
  • Skincare & cosmetics: Sterols and sterol derivatives are used in creams and topical products for their barrier-repair and anti-inflammatory properties. This market is growing and highly visible, with immediate consumer relevance (15).

Understand

While all applications had some level of local relevance, we wanted to prioritize the one that would be most impactful based on our previous landscape of social needs in the Hamilton community.

Based on our conversation with Dr. De France, we knew that D₂ was not the most impactful choice, & conservation showed similarly little local feasibility & community need.

Synthesize: Why Skincare?

After weighing the possible end-stage applications of sterols, our team decided to initially pursue skincare. This decision was informed by both community needs we identified and the unique properties of sterols, which are known for their barrier-repair, anti-inflammatory, and antioxidant effects (16).

In Hamilton, several social factors made skincare a compelling first focus:

  • Unhoused individuals often face chronic dermatitis and eczema due to exposure, with limited access to affordable care (17). A sterol-based cream could restore dignity and health while being cheaper than many existing options.
  • People who use drugs (PWUD) frequently suffer from skin wounds and abscesses. Unlike petroleum or antiseptic-based products, sterols could provide soothing, non-greasy relief with genuine clinical benefits (18).
  • Hamilton’s aging population, nearly 18% of residents, often experiences thinning skin and chronic inflammation (19). Affordable senior skincare is neglected in mainstream markets, and sterols could fill this gap.
  • Women’s health also emerged as an opportunity. Sterols show promise for reducing irritation and dryness associated with postpartum recovery and menopause. A locally produced, over-the-counter product could make effective care more accessible (20).

Taken together, skincare provided a socially meaningful and locally resonant pathway, one that was achievable for a student team, aligned with community values, and carried the potential for visible, near-term impact.

4.1.3 Evaluating Skincare as an Application for Ergosterol

Inquire

Is skincare the right angle for our sterol platform, and would consumers value a product made from recycled CO₂?

Reach Out

To explore this question, we spoke with Dr. Christian Euler, Assistant Professor in the University of Waterloo Department of Chemical Engineering. Dr. Euler brings extensive industrial experience in developing microbial platforms for chemical production, including work on the world’s first bio-based glycolic acid from a waste stream. His expertise lies in valorizing waste products such as CO₂ and plastics into sustainable, market-ready materials.

Christian Euler

During our conversation, Dr. Euler emphasized that consumer perception and sourcing transparency are critical when it comes to skincare and personal care products. While the circularity narrative is powerful, he encouraged us to think carefully about how customers might respond to products explicitly linked to “waste” CO₂. He challenged us to reflect on whether skincare was the best application for building community trust and market adoption, or if sterols might achieve stronger resonance in other sectors.

Understand

After reflecting on Dr. Euler’s feedback, our team convened for an internal cross-track discussion to evaluate the feasibility of pursuing the skincare angle. Several key insights emerged:

  • Consumer perception challenges: The skincare industry is increasingly driven by “clean beauty” narratives, which emphasize natural sourcing, transparency, and minimal processing. Marketing a product derived from “waste CO₂” risked clashing with consumer expectations and could even generate hesitation, despite its sustainable foundation.
  • Highly saturated market: The global skincare sector is already crowded with established players offering antioxidant, anti-inflammatory, and barrier-repair products. Breaking into this competitive field would require resources and branding capacity well beyond those available to a student team.
  • Equity and dignity concerns: Although our initial research highlighted potential benefits for vulnerable populations, such as unhoused individuals and people who use drugs, we recognized that positioning a “cheaper” CO₂-derived product for marginalized groups could unintentionally reinforce stigma rather than restore dignity.

Together, these reflections made us question whether skincare was the right application for our sterol platform, given both the social and market dynamics.

Synthesize

Ultimately, we decided not to pursue skincare as our primary application. While socially relevant in theory, both community perception and market realities suggested it was not the most impactful or empowering direction for our platform.

4.1.4 Reframing Toward Therapeutics - Progesterone & Menopausal Populations

Inquire

What other products can we make, and which align most closely with our community context and technical capabilities?

After stepping back from skincare, our team returned to our broader list of ergosterol applications. The option that resonated most strongly was therapeutics.

This direction not only reflected Hamilton’s emerging reputation as a hub for pharmaceutical development, but also echoed McMaster’s identity as a healthcare-centered institution. Unlike skincare, therapeutics offered a way to directly connect our platform to local priorities in health and medicine.

Around the same time, we were revisiting our earlier Hamilton research and demographic analysis, especially the city’s aging population and the healthcare challenges it faces.

This reflection coincided with a surge of news coverage from Health Canada and outlets such as the CBC reporting on drug shortages: particularly of hormones and HRT therapies, with warnings that these shortages were expected to worsen in the coming months (21).

Importantly, this was not just a Canadian issue: global reports underscored that hormone shortages are a widespread and growing challenge.

Together, these insights motivated us to consider therapeutic applications of ergosterol, with progesterone as a particularly compelling target.

Reach Out: Confirming Local Relevance of Progesterone

To test whether progesterone production from our system would be socially relevant and meet real healthcare needs, we began by consulting with Dr. Ashrin Jan, a pharmacist serving a community with a large older population, a demographic that mirrors Hamilton’s own.

Hamilton 350

Dr. Jan confirmed that progesterone has a consistent and high demand across multiple patient groups. It is prescribed daily to transgender individuals undergoing feminizing hormone therapy, to menopausal women for managing symptoms and preventing endometrial overgrowth (a cancer risk), and to younger women experiencing abnormal bleeding. She emphasized that menopause in particular is a significant and growing concern in Hamilton, aligning with our demographic research on the city’s aging population.

When we asked about patient decision-making and industry perspectives, Dr. Jan explained that cost-effectiveness drives choice: patients typically select the cheaper of two equivalent options, and pharmaceutical companies are more motivated by affordability and reliability than by sustainability narratives. This underscored that if our system could reduce costs while maintaining quality, it could fill an important local and global gap.

We also spoke with Dr. Alison Shea, an Obstetrician-Gynecologist and specialist in menopause and reproductive mental health.

Hamilton 350

From her perspective, many patients express hesitancy toward synthetic hormones. This underscored the importance of considering not just medical demand, but also how patients perceive and frame hormone therapies in their care.

At the same time, Dr. Shea acknowledged the ongoing shortages of progesterone and other HRT drugs, confirming that access remains a critical barrier in Canada and beyond. She encouraged us to continue reaching out to other experts in reproductive health and pharmaceutical supply chains to understand the full scope of need.

We also reached out to the Canadian Menopause Society, where we spoke directly with Dr. Chui Kin Yuen (MD, FRCSC, ABOG, MBA), Executive Director of the Society. Dr. Yuen confirmed that progesterone is an integral component of menopause treatment, playing a critical role in balancing estrogen therapy and preventing endometrial overgrowth. He further noted that progesterone has applications beyond menopause, including in other reproductive health contexts.

Hamilton 350

Importantly, Dr. Yuen affirmed that there is a real and ongoing need for reliable access to progesterone, and he encouraged us to continue reflecting on local populations to better understand their experiences and needs. His perspective gave us strong reassurance that pursuing therapeutic applications, and specifically progesterone, would align with both clinical realities and community health priorities.

Understand

The insights from our various conversations not only validated progesterone as a meaningful target but also highlighted the importance of coupling our technical design with economic modeling, ensuring that affordability is front and center when communicating with both patients and pharmaceutical stakeholders.

Synthesize

At this point, we solidified our decision to pursue progesterone as our end-stage application. Speaking with a range of stakeholders, from pharmacists serving aging populations, to clinicians specializing in menopause and reproductive health, to leaders in the Canadian Menopause Society, gave us a layered understanding of both the clinical demand and the community impact of progesterone.

While perspectives differed on patient preferences for synthetic hormones, the consistent acknowledgment of shortages, daily reliance on progesterone, and its central role in therapies such as HRT and menopause management confirmed that this was a socially meaningful & relevant direction for our project.

4.1.4 Exploring Cortisone as a Secondary Application

Inquire

As we refined our focus on progesterone, we also asked ourselves: Are there populations in Hamilton whose needs we were overlooking, and could our project have a broader impact by targeting multiple therapeutic pathways?

In revisiting our earlier conversations, we noticed that nearly every community stakeholder highlighted Hamilton’s disproportionately large unhoused population and the significantrespiratory health challenges facing the city. These challenges are shaped by multiple overlapping factors:

  • Air quality: Hamilton’s industrial base contributes to persistent smog, exacerbating asthma and chronic respiratory conditions (21).
  • Climate pressures: Urban heat islands intensify summer heat waves, worsening both skin conditions and respiratory vulnerability (22).
  • Wildfire smoke: In recent summers, smoke from national wildfires has dramatically reduced air quality across Southern Ontario, creating acute health risks for vulnerable populations (23).

These realities pushed us to consider cortisone, a compound derived from sterols and already widely used in two key ways:

  • As a topical cream for dermatitis, eczema, and inflammatory skin conditions, highly relevant for unhoused individuals exposed to the elements (24).
  • As part of respiratory therapies, such as inhaled corticosteroids for asthma and COPD - conditions that are exacerbated by Hamilton’s poor air quality and smog (25).

Reach Out

To validate this idea, we returned to Dr. Ashrin Jan, the community pharmacist who had previously highlighted the daily importance of progesterone. In this follow-up conversation, she confirmed that cortisone is another relevant ergosterol-derived therapy that serves diverse populations.

She emphasized that topical corticosteroids are among the most commonly dispensed treatments for inflammatory skin conditions, while inhaled cortisone derivatives remain frontline therapies for patients with chronic respiratory illnesses. This dual relevance, skin and respiratory, made cortisone a compelling candidate as a secondary application of our sterol platform.

Understand

From this reflection and consultation, we learned that:

  • Cortisone addresses gaps left by progesterone, serving populations such as unhoused individuals and those with respiratory conditions.
  • Hamilton’s local context (high rates of respiratory illness, environmental smog, and climate-driven health pressures) amplifies the relevance of cortisone.
  • Pharmacist confirmation ensured that cortisone was not just theoretically valuable but clinically grounded as an ergosterol derivative we could consider.

Synthesize

We expanded our therapeutic framing to include cortisone as a secondary application of our sterol platform. While progesterone remained our primary end-stage product, cortisone provided another socially meaningful pathway, one that spoke directly to Hamilton’s most vulnerable populations and the city’s environmental health challenges.

This dual focus allowed us to showcase the flexibility and broader impact of our system, highlighting how sterol-based engineering could be adapted to meet multiple local needs.

4.2 CO2 Stream Sources

4.2 CO₂ Stream Selection

Inquire

At the outset of our project, we were motivated by Hamilton’s long-standing identity as Steeltown. Targeting steel mill emissions as our CO₂ source felt like the most natural way to link Sterosaurus to local industry. However, we quickly realized that this vision depended on one critical question:

Would the steel industry actually be willing to adopt disruptive solutions like ours?

Reach Out

Despite repeated outreach attempts, we faced major challenges in connecting with steel companies. Eventually, we did receive insight from an anonymous steel industry worker (name withheld to protect their privacy).

They explained that while innovation is always of interest, cost remains the primary driver for steel operations. Existing equipment already carries long-term warranties and phase-out plans that stretch into the coming decades.

Because of this, adopting new, disruptive technologies, particularly those that interfere with emissions streams, would be highly unlikely in the near future without strong government mandates or subsidies.

Understand

From this exchange, we learned that:

  • The steel sector is cost-locked: economics matter far more than sustainability narratives.
  • Equipment warranties and phase-outs create structural barriers that prevent new technologies from being adopted quickly.
  • Without policy incentives or regulatory pressure, industrial actors in this space are not motivated to pursue solutions like ours.

Synthesize

We concluded that steel, while symbolically powerful in Hamilton, was not the most realistic CO₂ stream for our project. Without industry partners willing (or incentivized) to collaborate, this pathway risked stalling. As a result, we began to shift our focus away from steel and toward alternate CO₂ sources that might be more accessible, collaborative, and better aligned with our project’s goals.

4.2.2 Exploring Alternative CO₂ Streams: Breweries

Inquire

After realizing that steel was not the most feasible CO₂ source, we asked:

What other CO₂ streams could we target that would still be impactful and locally relevant?

Looking back at our Human Practices principles, we wanted a source that aligned with Hamilton’s economy, provided opportunities for visible community partnerships, and was practical for a student-led project.

Reach Out

We reconnected with Dr. Christian Euler, whose industrial background spans both academia and commercialization. Dr. Euler co-founded Phycus Biotechnologies, where he helped scale the world’s first bio-based glycolic acid from a waste stream, giving him deep expertise in linking microbial upcycling with market realities.

From his perspective, smaller local businesses like breweries are far more open to innovation than entrenched heavy industry. He explained that breweries already handle CO₂ in controlled ways, and that positioning our project as a “value-add”, helping them market their products as brewed with upcycled CO₂, could give them a consumer-facing advantage. He also suggested that these kinds of collaborations could open the door to government incentives designed to support circular manufacturing and sustainability transitions.

Encouraged by this advice, we visited AquaNova, a local Hamilton brewery. During the visit, staff showed us around their facilities and highlighted their existing chimneys and vent systems. This confirmed that CO₂ capture and recycling would be technically feasible in a brewery setting, and that breweries could serve as approachable, community-facing partners for our project.

AquaNova 1
AquaNova 2

Understand

From these engagements, we learned:

  • Breweries offer a practical CO₂ source: emissions are already captured in clear venting systems.
  • Local partnerships matter: small businesses are more open to adopting experimental solutions, especially with visible sustainability branding.
  • Policy and funding could amplify impact, as governments often support projects that combine circularity with community benefits.

Synthesize

We pivoted from steel to breweries and similar local industries as our target CO₂ stream. Hamilton and the nearby Niagara region host a thriving ecosystem of craft breweries, wineries, and artisanal producers, all of which could benefit from sustainability narratives tied to circular CO₂ use. This shift gave our project a more realistic, locally embedded foundation, while also connecting Sterosaurus to industries with strong community presence and consumer engagement.

4.3 Ethical Reflection and Responsibility

Inquire

Recognizing that every project carries ethical dimensions, we asked:

What ethical considerations should we keep in mind as we advance Sterosaurus, and how can we ensure our work reflects responsible engagement with affected communities?

We wanted to validate whether our choices, from product selection to community partnerships, aligned with principles of equity and social responsibility.

Reach Out

We spoke with Dr. Alexis Paton, a professor of bioethics at Aston University whose work examines the intersection of medicine, ethics, and society.

Dr. Paton

Dr. Paton encouraged us to think critically about who benefits first from our work and how different healthcare systems shape patient choice. She noted that in systems like the UK, patients often cannot choose their pharmaceuticals, while in Canada choice exists but must be patient-driven. Certain groups, particularly middle-class women, tend to have more freedom to advocate for their care and to opt for “green” or sustainability-linked pharmaceuticals. Ethical responsibility isn’t only about “avoiding harm,” but about ensuring that benefits reach those who most need them and that project framing does not unintentionally exclude or stigmatize vulnerable groups.

She affirmed that our engagement with local populations and clinical stakeholders was an ethical strength, since it showed we were grounding our design in community realities rather than abstract ideals.

Understand

From this conversation, we understood that:

  • Ethical considerations in our project are not about uncovering hidden risks, but about ensuring equity and inclusion.
  • Freedom of pharmaceutical choice varies between contexts, so messaging must adapt accordingly.
  • Our commitment to local, stakeholder-driven priorities strengthens the ethical foundation of our work.

Synthesize

We reframed our ethical approach as one of proactive responsibility: prioritizing local needs, tailoring our communication and framing to different healthcare structures, and ensuring that our work is not just technically viable but socially responsive.

Speaking with Dr. Paton validated that we were on the right path, while also reinforcing the importance of continued dialogue with ethicists and social scientists as Sterosaurus evolves.

4.4 Economic Development & Pitch Evolution

Inquire

Beyond the science and social framing of Sterosaurus, we continually asked ourselves:

How can this project be positioned for long-term economic viability, and what narratives resonate most with different stakeholders?

Throughout the iGEM cycle, we tested this question by bringing our project into entrepreneurial competitions, using pitches as both validation and refinement tools.

Reach Out

We first entered The Arena, a national pitch competition that put 50 Canadian university projects in a bracketed elimination format.

Week after week, we revised our pitch based on judge feedback, sharpening our verbiage, simplifying complex science, and embedding validation and customer research into our narrative. The high-pressure format forced us to make the science accessible without diluting accuracy. Judges consistently praised the depth of our knowledge and the strength of our science, showing us how clarity and context can transform a technical concept into a compelling entrepreneurial vision.

Our team made it to the quarter-final round, highlighting our economic potential!

Arena 1Arena 2

We then adapted our work for the iGEM Biohackathon Pitch Competition, reframing the project as Algaera, a modular biosystem rather than a single-product solution. This required undoing some of the simplifications from The Arena and instead leaning into technical detail.

iGEM Biohackathon

However, the feedback we received was eye-opening: judges warned that pitching a modular platform left our project sounding too uncertain and hypothetical. They strongly encouraged us to narrow our scope and highlight one clear product application. This was a turning point in how we framed Sterosaurus moving forward.

Next, we presented at the Global Startups Canada Pitch Competition, where we competed against 200 national teams from diverse industries.

Making the top 10 was a validation of our scalability story and ability to connect with a broad, non-technical audience. However, we also saw where we lagged behind: many competitors already had prototypes or early-stage companies, while we were still in proof-of-concept territory. This feedback reminded us that while our science was strong, our pitch needed to foreground practical pathways to real-world implementation.

CAPS

Finally, we joined the Youth Impact Challenge’s Summer Innovation Challenge, which supported Canadian innovators with social and environmental projects.

Arena 1Arena 2

Advancing to the top 10 and winning the “Most Spirit” award gave us not only recognition but also mentorship. Weekly sessions with our mentor Heba Iftikhar helped us refine our business model, storytelling, and market strategy. Workshops on proposals and market research deepened our understanding of what it means to pitch science to funders and communities, not just judges.

Across these experiences, one lesson stood out: know your audience. We learned that tailoring to non-scientific audiences does not mean “dumbing it down,” but rather framing our work so that it is accessible, engaging, and relevant.

Understand

From these competitions and mentorship experiences, we understood that:

  • Economic validation is not just about financials but aboutclarity, resonance, and credibility.
  • Different audiences require different narratives: technical depth for expert panels, simplicity and relevance for public or mixed audiences.
  • A successful pitch must strike a balance between scientific integrity and market clarity, with one strong product application at its core.

Synthesize

Through these iterative pitch experiences, Sterosaurus matured not only as a technical project but as a viable entrepreneurial concept.

We shifted from an abstract, modular platform to a clearly defined product narrative (progesterone), validated by both stakeholder interviews and pitch competition feedback.

Pitching became a human practices tool: a way to test assumptions, stress-test our story, and refine how we communicate synthetic biology to the public, industry, and investors. These experiences gave us both confidence and discipline in economic framing, ensuring that Sterosaurus was more than a lab exercise. It became a project with the language, structure, and vision needed for real-world impact.




Through this evolutionary process, Sterosaurus transformed from a broad concept into a focused, socially grounded therapeutic platform.

By integrating community needs, testing assumptions with experts, and validating our framing through stakeholder conversations and economic competitions, we ensured that our final direction was both technically feasible and ethically responsible. Much like a fossil record tells the story of adaptation, these cycles of inquiry and reflection document how Sterosaurus grew into a project not only ready for iGEM, but also positioned to make meaningful impact in the real world.

From Fossils to Frameworks: Our Lab & Design Journey

NOVEMBER 2024 – OCTOBER 2025, ENG CYCLE 5

Our wet lab and engineering journey was defined by a series of expert consultations, pivots, and technical adaptations that shaped how we would build Sterosaurus. Each conversation with faculty and industry experts gave us insight into the challenges of algal engineering and sterol biosynthesis. What follows is the story of our most important lab decisions, and how they guided our plasmid design, strain choice, and extraction workflows.

5.1 Choosing the Right Chassis

We wanted a system that could both demonstrate proof-of-concept in the lab and potentially scale for future applications. We first considered Chlorella sorokiniana, which has been highlighted in industrial contexts, but wanted to make sure this was supported by experts in algal work.

5.1.1 Switching from Chlorella to C. reinhardtii

Inquire:

What algal chassis should we use to produce sterols?

Reach Out:

We first consulted with Dr. Kyle J. Lauersen, Associate Professor of Bioengineering at KAUST and a leading expert in algal metabolic engineering. Dr. Lauersen is internationally recognized for his innovations in algal bioprocesses and serves on the editorial boards of several biotechnology journals.

Dr. Kyle Lauersen

In our conversation, Dr. Lauersen emphasized that while Chlorella sorokiniana is sometimes used in industrial contexts, it is notoriously challenging to transform, strongly silences transgenes, and often yields irreproducible results even when published.

For a student team like ours, these barriers would make progress nearly impossible. Instead, he recommended pivoting to Chlamydomonas reinhardtii, often described as the “green yeast” of algal biology. C. reinhardtii benefits from a structured chloroplast, a mature genetic toolkit, extensive community resources, and a track record of success in academic projects.

He cautioned, however, that transformation efficiency in C. reinhardtii is still very low and requires screening many colonies, but unlike Chlorella, it is tractable for iGEM-scale work.

Understand:

This guidance clarified that while Chlorella might look attractive for long-term industrial use, it was not a realistic choice for our team. Chlamydomonas offered:

  • A well-developed toolbox (promoters, markers, intron optimization tools).
  • Strong community support in the algal synthetic biology space.
  • Much higher chances of us achieving a stable proof-of-concept within iGEM’s timeframe, even if screening effort would be high.

Synthesize:

We made the pivot to Chlamydomonas reinhardtii as our chassis. This was the single biggest change in our wet lab direction, as it positioned our project for success by grounding it in a system we could realistically engineer.

5.1.2 Validating C. reinhardtii as a Chassis

Inquire:

Is switching to Chlamydomonas reinhardtii supported by other researchers as well?

Reach Out:

We also consulted Dr. Valerie Ward (University of Waterloo), who has extensive experience engineering Chlorella using Agrobacterium-mediated transformation.

Dr. Valerie Ward

She explained that Chlorella is a “dumping ground taxonomically”, strains labeled Chlorella often behave differently, making reproducibility difficult. While 99% of C. sorokiniana’s sterol profile is ergosterol (scientifically attractive), she emphasized that engineering it is extremely difficult and not recommended for an iGEM-scale project.

Transformation is possible using plant-based toolkits (e.g., pCAMBIA vectors, CaMV35S promoters, GUS/X-gal reporters), but productivity is highly variable. Hundreds of colonies often show inconsistent expression, with screening becoming a matter of “luck” rather than reliability. She further noted that ergosterol levels vary dramatically between colonies, making proof-of-concept nearly impossible in a one-year timeframe.

She confirmed advice from Dr. Lauersen: while tools exist, Chlamydomonas reinhardtii remains far more tractable due to its community resources and mature toolkit. She added that Chlorella transformations often fail to integrate stably, episomal plasmids show low expression, and silencing is a major issue.

Understand:

From Dr. Ward’s perspective, Chlorella’s ergosterol-rich profile is appealing on paper, but the lack of standardized tools, poor reproducibility, and colony-to-colony variability make it infeasible for iGEM-scale work.

While Chlorella may be interesting for long-term industrial R&D, Chlamydomonas reinhardtii is the only realistic choice for our team.

Synthesize:

We confirmed our pivot away from Chlorella toward Chlamydomonas. Dr. Ward’s insights reinforced Lauersen’s advice and gave us confidence that this was not just about convenience but about feasibility: C. reinhardtii provides the best chance of demonstrating sterol overproduction in algae within iGEM constraints.

5.2 Plasmid & Construct Design

5.2.1 Maximizing Stable Expression in Our Chassis

Inquire:

Once we had chosen Chlamydomonas reinhardtii as our chassis, we asked: what plasmid design strategies would maximize our chances of stable expression in algae?

Reach Out:

We consulted again with Dr. Kyle J. Lauersen, who explained why algal expression fails so often: C. reinhardtii aggressively silences long, intron-free transgenes.

He told us that stretches of ~500 bp without introns are a common failure point, and that successful teams treat intronization and codon optimization as first-class design rules, not optional polish. He pointed us to Intronserter for automated intron placement and emphasized keeping all coding sequences codon-optimized for Chlamy.

He also recommended the pOpt2 vector family because it’s been battle-tested in Chlamy, and flagged two pragmatic choices for selection and screening:

  • An arginine-auxotrophy system (e.g., pOpt2_mVenus_Arg with CC-5340) to avoid antibiotics;
  • Fluorescent fusions (mVenus/mCerulean) to verify expression by microscopy when transformation efficiency is low.

Understand:

From this guidance, we internalized three design principles. First, algal constructs must be built for the host’s transcriptional biology. That means intronized, codon-optimized ORFs paired with reliable promoters/terminators, or they will be silenced.

Second, in Chlamy, screening is the experiment: with inherently low transformation efficiencies and random integration levels, fluorescence-based readouts are far more reliable than blue/white screening.

Third, tooling choices should reduce friction: using a backbone like pOpt2 and auxotrophy selection allows us to spend time engineering and measuring, not fighting avoidable plasmid/selection pitfalls.

Synthesize:

We rebuilt our plasmid plan around those principles. Every pathway gene was codon-optimized for C. reinhardtii and intronized using Intronserter (and when the server went offline, we ran the code locally to keep momentum).

We standardized on the pOpt2 backbone with strong, validated regulatory parts and fused reporters to enable microscopy-based screening of transformants. We initially implemented arginine-auxotrophy selection (pOpt2_mVenus_Arg with CC-5340) to avoid antibiotics, and when that specific plasmid could not be recovered later in the season, we ported the same design logic to a hygromycin-resistant variant (pOpt2_mCerulean_Hyg) so our expression and screening strategy remained intact.

These choices operationalized Dr. Lauersen’s advice end-to-end: constructs that C. reinhardtii will transcribe, vectors the field relies on, and readouts that let a student team actually find the rare winners.

5.2.2 Improving Transgene Expression

Inquire:

What design strategies can reduce silencing and improve the reliability of transgene expression in Chlamydomonas?

Reach Out:

We consulted with Dr. Isabel Desgagné-Penix, Canada Research Chair on Plant Specialized Metabolism and Research Chair in Metabolic Engineering of Microalgae at the Université du Québec à Trois-Rivières.

Dr. Isabel Desgagné-Penix

Drawing on her extensive experience engineering plant and algal systems, she highlighted several design constraints. She strongly advised against using zeomycin/zeocin, citing cost and instability, and instead recommended hygromycin as a stable, reliable resistance marker. She warned that if the resistance cassette is positioned far from the gene of interest, colonies may survive selection without expressing the target gene, leading to false positives. To counter this, she suggested linking resistance tightly to expression, ideally within the same cassette. For screening, she recommended fluorescent fusion proteins (e.g., YFP/GFP) to track expression and noted that 2A peptides can yield incomplete cleavage, so linkers or fusion constructs should be carefully validated.

Understand:

  • Codon optimization and strong promoters/terminators are mandatory.
  • Resistance cassettes must be tightly coupled to the GOI to avoid false positives.
  • Fluorescent fusion screening is effective but must be backed by verification assays (e.g., Western, PCR).

Synthesize:

We redesigned plasmids to use hygromycin resistance linked directly to expression cassettes, standardized codon-optimized ORFs, and adopted fluorescent fusion tags for colony screening. This ensured that our plasmid design balanced feasibility with reliability, reducing wasted effort on false-positive transformants.

5.2.3 Assembling Multi-Gene Constructs

Inquire:

How should we assemble multi-gene constructs for sterol production, and what cloning or silencing-avoidance strategies could improve our plasmid designs?

Reach Out:

We consulted Dr. Michael Pyne (Assistant Professor in Synthetic Biology, University of Western Ontario), whose research focuses on engineering plant natural product pathways in microbial systems using synthetic biology and retrosynthesis.

Dr. Michael Pyne

Dr. Pyne emphasized that while our existing arginine-rescue plasmid with mVenus was useful, we could swap the reporter for a cassette of upstream genes, provided we carefully considered promoter use and linker placement.

He explained that giving each gene its own promoter avoids uneven expression, but complicates integration and screening, whereas using a single promoter with linkers risks incomplete cleavage and mixed protein products. He suggested exploring self-cleaving peptides or glycine linkers, though with caution. He also reinforced earlier advice from other experts: codon optimization and silencing-resistance strategies are essential in algae.

Understand:

We clarified that:

  • Cassette design must balance promoter complexity with expression reliability.
  • Self-cleaving peptides/linkers are promising but imperfect, sometimes yielding uncleaved fusions.
  • Avoiding silencing remains a central concern, reinforcing the need for codon optimization and strong promoters.

Synthesize:

This advice informed our plasmid design choices: we prioritized strong constitutive promoters with carefully designed linkers, while keeping single-gene constructs as controls to test expression. Dr. Pyne’s guidance gave us a framework to weigh simplicity against control in our construct architecture.

5.3 Pathway Strategy: MVA vs. MEP

Once we had established our chassis and plasmid framework, we asked: which sterol biosynthesis pathway should we prioritize (MVA or MEP) and how should we balance flux and sinks to avoid metabolic burden?

5.3.1 MEP vs. MVA Pathways

Inquire:

Which pathway strategies in algae give us the best chance of increasing sterol production without overwhelming the cell?

Reach Out:

In our consultation with Dr. Claudia Vickers, a professor with extensive experience in synthetic biology and industrial biotechnology from the Queensland University of Technology, emphasized both the potential and pitfalls of sterol engineering in algae.

She agreed our focus on ergosterol was strategic, since few green algae naturally produce it. Her main advice was to strengthen downstream sinks before boosting flux, particularly by overexpressing squalene epoxidase (rate-limiting) and testing heterologous orthologs to bypass regulation. She also noted the importance of balancing precursors (IPP and DMAPP), since their ratios control flux into products like FPP and ultimately ergosterol. While enzymes like IDI could help adjust these ratios, she cautioned that upstream MEP enzymes (HDR/HDS) are difficult to work with due to redox sensitivity and iron–sulfur dependence.

Dr. Vickers warned that the MEP pathway is too tightly regulated for simple overexpression: it is stress-responsive, prone to toxic intermediate buildup (e.g., MEcPP), and often resists flux increases. Instead, she recommended exploring the MVA pathway as a bypass: either a full synthetic pathway from acetyl-CoA, or a partial version supplemented with mevalonolactone, which is cheap, cell-permeable, and feasible for iGEM timelines.

She also flagged infrastructure challenges: photosynthetic bioreactors are ideal but difficult to maintain, so heterotrophic growth with sugar might be necessary. Finally, she advised us to keep expectations realistic, and encouraged us to build a strong theoretical framework alongside lab work.

Understand:

From Dr. Vickers, we learned three critical lessons:

  • The MEP pathway is too tightly regulated for straightforward boosting, overexpressing upstream enzymes risks toxicity, bleaching, and flux collapse.
  • Success depends on strengthening downstream sinks first (e.g., squalene synthase, squalene epoxidase, cycloartenol synthase), ideally using heterologous versions to bypass native controls.
  • To secure enough precursors, a synthetic MVA pathway (full or partial, with mevalonolactone supplementation) offers a realistic bypass of regulation.

Synthesize:

Based on this, we shifted our strategy:

  • Abandoned upstream-only MEP boosting and knockout plans (too unstable for Chlamy).
  • Prioritized downstream sink enzymes as our main leverage point, while testing orthologs to avoid bottlenecks.
  • Began designing MVA pathway constructs, with supplementation as a near-term option to guarantee precursor supply.
  • Set realistic milestones for iGEM: focus on stable expression and measurable sterol output, while documenting pathway complexity as part of our contribution.

5.3.2 Orthologs & Partial Modules

Inquire:

How should we design our sterol pathway strategy in Chlamydomonas? Could introducing orthologs or partial MVA modules help us bypass regulation in the native MEP pathway, and how should we balance multi-gene expression to ensure adequate precursor supply?

Reach Out:

In consultation once again with Dr. Pyne, he noted that our idea of introducing orthologs of MEP enzymes could indeed help evade regulatory silencing, and he confirmed that a partial MVA pathway (just the upstream module with supplementation) is a viable strategy that has precedent in the literature. He also encouraged us to think carefully about promoter/linker design when assembling multiple genes in one cassette, warning that unequal expression can undermine pathway function.

Understand:

From Dr. Pyne, we learned:
  • Ortholog expression can bypass regulatory controls that suppress native enzymes.
  • Partial MVA modules with supplementation are a realistic strategy for an iGEM-scale project.
  • Promoter architecture matters: multi-gene cassettes need careful balancing to avoid bottlenecks.

Synthesize:

We integrated his guidance into our design by testing both orthologs of key enzymes and partial MVA constructs alongside our squalene synthase/epoxidase overexpression strategy. His input also shaped how we planned to structure multi-gene cassettes, reinforcing that pathway balance, not just gene count, is critical.

5.3.3 Stress Pathways & Core Enzymes Exploration

Inquire:

Could stress pathways or transcription factors help us boost sterol yields in Chlamydomonas, or should we instead focus on core enzymes?

Reach Out:

We consulted Dr. Yasuyo Yamaoka, from the Catholic University of Korea, who has studied sterol biosynthesis and ER stress in Chlamydomonas reinhardtii.

Dr. Yasuyo Yamaoka

She explained that while sterol levels rise during ER stress, cell growth halts, making this an impractical strategy for improving yield. Similarly, stress-responsive transcription factors such as IRE1 and bZIP1 are tied to survival signaling rather than productive sterol accumulation. Instead, she recommended concentrating on core metabolic enzymes, highlighting HMG-CoA reductase, squalene synthase, and CYP51 as the strongest levers, and suggested drawing lessons from yeast sterol engineering.

Understand:

  • Stress-induced pathways (like IRE1/bZIP1) may elevate sterols locally, but at the expense of cell growth, so they are not practical for yield-focused engineering.
  • Enzyme overexpression is still the most promising route; specifically, targeting HMG-CoA reductase, squalene synthase, and CYP51.
  • Lessons from yeast sterol engineering could provide transferable strategies to microalgae.

Synthesize:

This guidance confirmed our decision to drop transcription factors as targets and instead prioritize enzyme-level interventions in the ergosterol pathway. It gave us confidence that we were focusing on the most realistic and productive levers for yield improvement.

5.4 Extraction & Quantification

5.4.1 Measuring Sterol Production

Inquire:

What workflows should we use to reliably measure sterol production from algal cultures?

Reach Out:

Dr. Desgagné-Penix also provided advice on sterol quantification. She recommended a liquid–liquid extraction protocol paired with GC-MS, which is reproducible and sensitive for sterols. To streamline work, she advised a staged pipeline: first screen colonies via fluorescence and quick colony PCR, then advance promising ones into full GC-MS analysis.

Understand:

  • GC-MS remains the gold standard for sterol analysis.
  • A triage workflow prevents wasted resources by narrowing colonies before full quantification.

Synthesize:

We embedded a multi-stage workflow: preliminary screening via fluorescence and PCR, followed by liquid-liquid extraction and GC-MS for final sterol measurement. This gave us both efficiency and confidence in data quality.

5.4.2 Overcoming Yield & Sensitivity Concerns

Inquire:

How can we reliably extract and quantify ergosterol from algae, given its sensitivity and the small yields typical of microalgal systems?

Reach Out:

We also reached out to Dr. Jill Winkler-Moser, a research chemist and lead scientist at the USDA’s Functional Foods Research Unit. Her work focuses on lipid oxidation, antioxidants, and the development of oleogels.

Dr. Jill Winkler-Moser

Dr. Moser provided detailed guidance on sterol analysis workflows, emphasizing that the main challenge lies in extraction rather than GC-MS itself. She shared sterol internal standards , GC-MS reference spectra, and example chromatograms to help us benchmark results.

She also sent full protocols for saponification, derivatization, and acid hydrolysis but cautioned that acid-based methods can damage ergosterol. Instead, she recommended alternative derivatization reagents which stabilize sterols without degradation.

For sample preparation, she advised using liquid nitrogen grinding with mortar and pestle to rupture cells and minimize moisture, while avoiding homogenizers in liquid nitrogen. She highlighted the Bligh & Dyer liquid-liquid extraction method as a strong fit for microalgae and recommended adding acetic acid to help break down carbohydrate-rich walls.

For quantification, she stressed the importance of derivatizing sterols with TMS (trimethylsilyl groups) to increase volatility and improve GC-MS peak sharpness. Finally, she suggested using established libraries (NIST, Wiley, lipid-specific databases) and area-under-curve analysis for identification and quantification.

Understand:

From Dr. Moser’s advice, we learned that:

  • Extraction quality is the main bottleneck, not the instrument itself.
  • Acid hydrolysis risks damaging ergosterol; alternative derivatization methods are safer.
  • Internal standards are essential for reproducibility and quantification.
  • Even small biomass samples (~50 mg) are sufficient when carefully prepared and derivatized.
  • Standard libraries and fragmentation patterns can reliably confirm ergosterol identity.

Synthesize:

We embedded these recommendations into our pipeline:

  • Adopted Bligh & Dyer extraction with acetic acid to improve recovery.
  • Standardized on TMS-based derivatization (MTBSTFA or MSTFA) to stabilize and detect sterols.
  • Incorporated internal standards provided by Dr. Moser to calibrate GC-MS runs.
  • Built ergosterol detection directly into our proof-of-concept workflow, making quantification a core validation step rather than an afterthought.

5.4.3 Analytical Strategies for Detection

Inquire:

What analytical strategies are most practical for detecting ergosterol and related intermediates in microalgae?

Reach Out:

Dr. Pyne advised us to secure sterol standards for accurate calibration, and to expect that GCMS and LCMS workflows would require separation steps like HPLC. He cautioned that interpretation can be complex and that standards are essential for reliable quantification. He also pointed us toward carotenoid pathways as a useful comparator. Their phenotypic readouts (orange pigmentation) make them more straightforward to validate.

Understand:

We learned that:

  • Internal standards are non-negotiable for GCMS/LCMS sterol work.
  • HPLC separation improves accuracy but adds complexity.
  • Pigment pathways can provide simpler validation models.

Synthesize:

We incorporated his advice by budgeting for standards and planning GCMS-based workflows for sterol quantification. While we focused on ergosterol, his suggestion to compare against carotenoid pathways also shaped how we thought about measurable outputs and proof-of-concept validation

5.5 Integration & Stability

5.5.1 Silencing Concerns

Inquire:

After designing our constructs, we asked: how could we ensure they would actually stay active in C.reinhardtii, given algae’s reputation for silencing transgenes?

Reach Out:

We consulted once more with Dr. Lauersen, who cautioned us that algae are 25 years behind other platforms in genetic engineering largely because of silencing. Even when antibiotic resistance works, phenotypic expression often disappears. He explained that:

  • DNA integrates randomly into the genome, leading to highly variable expression. Out of 96 colonies, only one might show good expression.
  • Transient expression or episomes are unreliable; stable integration is necessary but inconsistent.
  • Screening is essential: he recommended using fluorescent tags (mVenus/mCerulean) under a microscope to identify successful transformants, since Western blots are often infeasible at iGEM scale.
  • Integration outcomes are essentially a matter of numbers and patience. Many colonies must be screened before a reliable one is found.

Understand:

  • Silencing is the rule, not the exception in algae; we had to expect that most transformants would fail.
  • Stable genomic integration was the only viable way forward, even if expression was variable colony-to-colony.
  • Success depended less on “perfect design” and more on robust screening strategies to catch rare successful transformants.

Synthesize:

We built our workflows around Lauersen’s warnings. Instead of assuming every transformant would be expressed, we integrated fluorescent reporters directly into our constructs and committed to screening large numbers of colonies. By treating integration and stability as a bottleneck, we grounded our expectations and designed a realistic pipeline: low efficiency, high variability, but achievable proof-of-concept if we could identify even a handful of true expressors.

5.5.2 Stabilizing Expression

Inquire:

How can we ensure transgene expression remains stable over time in Chlamydomonas?

Reach Out:

In a separate conversation, Dr. Desgagné-Penix warned us that even integrated Chlamydomonas lines often lose expression within weeks due to strong silencing mechanisms. She noted that the transformation method (electroporation, glass bead, gene gun) matters less than planning for stability and re-screening over time.

Understand:

  • Episomal systems are unstable in algae.
  • Stable lines require integration, but silencing is still a risk.
  • A realistic plan must include screening many colonies and monitoring expression durability.

Synthesize:

We pivoted toward integration-capable constructs and designed a workflow with regular verification checkpoints (fluorescence + PCR) to track expression stability over time.

5.5.3 Bio-Social Barriers to Stability

Inquire:

What barriers exist for scaling algal sterol production, both biologically and socially, and how might these affect the long-term stability of our system?

Reach Out:

In our conversation with Dr. Mark Lefsrud (McGill University), who leads the Biomass Production Laboratory, he cautioned us about algae’s tendency toward genetic drift.

Dr. Mark Lefsrud

With division times of only hours, strains can accumulate changes within 7–10 cycles, meaning a culture may behave very differently after just a few days. Chlorella in particular is notorious for drifting “all over the place.” Without environmental control, this can make engineered traits unstable over time.

On the human practices side, he noted that public perception of algae is generally positive, water use might raise concerns elsewhere, but in our Canadian context it is not a major issue.

Chemical extraction methods could be scrutinized, though most researchers and companies have moved past these objections.

The real barrier is economic: algae-based production often fails to hold together at scale, with yields too inconsistent to attract sustained investment. He pointed to dietary supplements as one of the few niches where algal compounds have made a successful market entry, but for bulk commodities like fuels, the economics are not competitive unless oil prices rise above $200/barrel.

Understand:

We learned that:

  • Genetic drift is a serious stability issue, undermining reproducibility without tight control.
  • Sustainability objections are limited; algae are widely seen as a “good idea,” but the economics are challenging.
  • Consistency and yield are the major barriers preventing industry from scaling algal bioprocessing.

Synthesize:

We integrated this advice by treating our proof-of-concept as exactly that: a lab-scale demonstration, not an industrial prototype. Dr. Lefsrud’s insights gave us realistic boundaries for our claims and reminded us that genetic drift and economic viability must be part of our long-term framing, which helped contribute to the earlier described economic development of our project.

5.5.4 Improving Stable Expression & Transformation Success

Inquire:

What strategies improve transformation success and stable transgene expression in C. reinhardtii?

Reach Out:

We consulted Dr. Serge Noumessi (an experienced cellular and molecular biologist from the Université du Québec à Trois-Rivières), who shared detailed insights into both culturing and transformation practices in C. reinhardtii.

Dr. Serge Noumessi

He emphasized that stable expression depends heavily on promoter and terminator choice, and that introns are indispensable. Without them, transcription often stalls, but with properly placed introns alongside promoters, expression is far more reliable.

He explained that DNA integrates randomly through non-homologous end joining (NHEJ), which makes large constructs prone to truncation. Smaller, modular fragments are far more likely to survive intact. He also underscored that silencing is common, and sometimes requires swapping out regulatory elements to restore expression.

For screening, Dr. Nouemssi recommended combining fluorescent reporters with colony PCR as a baseline, and noted that flow cytometry can provide more precise single-cell confirmation when available. He further suggested that positive controls and redundant validation strategies are critical, since fluorescence alone does not always guarantee protein expression.

Understand:

  • Promoter-terminator pairs strongly influence detectability of expression.
  • Introns are required in Chlamydomonas for transcriptional stability.
  • NHEJ favors smaller constructs, while large cassettes risk fragmentation.
  • Silencing is common and may require iterative redesign.
  • Screening requires redundancy: fluorescence, PCR, and, if possible, flow cytometry.

Synthesize:

We refined our construct design strategy by moving toward smaller, modular plasmids with carefully chosen promoter/terminator pairs and introns to maximize stability. We also incorporated redundancy in our screening pipeline (fluorescence combined with PCR, and flow cytometry if accessible) to confirm transformants with greater confidence. This advice directly strengthened our plasmid redesign framework and gave us a more realistic path toward stable ergosterol overproduction in C. reinhardtii.

5.6 Culturing Practices

5.6.1 Optimizing Growth

Inquire:

What practical steps should we take to optimize Chlamydomonas growth, and how can we balance ease of culture with productivity for an iGEM-scale project?

Reach Out:

Consulting again with Dr. Lefsrud from the McGill University Biomass Production Lab, he explained that aeration is the easiest and most important parameter to control. Even a simple bubbler dramatically improves circulation. He recommended column-style bioreactors (PVC tubes, 3-6 inches) as a scalable option, while noting that enriched CO₂ can boost growth but is not critical at our stage.

Light was another key factor: algae saturate quickly, and as density increases, light penetration drops from ~150 µmol at the surface to below 50 µmol in the center. Nutrient depletion becomes the limiting factor after 3 to 4 days, and biofilm buildup on reactor walls blocks light even further.

By about a week, cultures often need harvesting.

For teams like ours, Dr. Lefsrud recommended starting with batch culture rather than continuous, as it is easier to manage and avoids many pitfalls.

Understand:

We learned that:

  • Aeration and light penetration are the most practical growth levers at our scale.
  • Nutrient depletion and biofilm buildup limit culture lifetime to about a week.
  • Batch culture is the most realistic strategy for iGEM-scale work.

Synthesize:

We adopted batch culture as our standard practice and designed growth curves to identify optimal windows. His advice reinforced that “simple but stable” setups were best for us, and that chasing industrial-style conditions would be unrealistic within iGEM’s timeline.

5.6.2 Maintaining Cultures

Inquire:

How should we maintain Chlamydomonas reinhardtii cultures given that cryopreservation is not reliable, and what growth practices best prepare them for transformation?

Reach Out:

We consulted again with Dr. Nouemssi, who shared detailed insights into culturing C. reinhardtii.

He confirmed that cryopreservation is not viable for most strains (attempts usually result in cell death), and instead recommended maintaining continuous culture.

He explained that cultures can be kept on TAP media at ~25 °C for up to a month, depending on light intensity, but need to be regularly monitored and transferred (every 2–3 weeks) to prevent decline. He also noted that batch culture, rather than continuous, is the most accessible approach for a student team, and highlighted specific care points: preventing desiccation on plates, monitoring for yellowing as a sign of stress, and handling arginine supplementation correctly (never autoclaving, always filter-sterilizing).

Importantly, he advised subculturing based on OD, starting new cultures at ~0.01 and growing to mid-exponential phase (0.5–0.7) before transformation. He also reassured us that exact photon flux values are not critical at this scale. Standard white fluorescent lighting is acceptable so long as growth is consistent.

Understand:

  • Cryopreservation doesn’t work. We must rely on continuous culture with regular transfers.
  • Batch culture is the most practical method for early experiments.
  • Subculturing should be guided by OD (start at ~0.01, grow to 0.5–0.7 before transformation).
  • Exact light levels aren’t critical; standard white lights are sufficient if growth is stable.
  • Media prep details matter (humidification, arginine supplementation post-autoclave).
  • Culture health can be assessed visually (color change, biofilm).

Synthesize:

We adopted continuous culture as our maintenance method, planning regular transfers and careful monitoring to prevent loss of viability. We also shifted our media preparation protocols to ensure arginine is added via sterile stock rather than during autoclaving.

By incorporating OD tracking into our workflow, we standardized when to subculture and prepare for transformation. We also confirmed that our basic white fluorescent lighting setup was adequate for maintaining healthy growth.

Together, these changes made our culture workflow more reliable and practical, setting a foundation for successful downstream transformation experiments.

5.7 Modeling & Regulation

5.7.1 Mathematical Models for Predictive Decision-Making

Inquire:

How can we predict potential bottlenecks, balance gene expression, and showcase the impact of our designs?

Reach Out:

We spoke with Dr. Brian Ingalls (Professor of Applied Mathematics, University of Waterloo), an expert in mathematical modeling of biological systems.

Dr. Brian Ingalls

Dr. Ingalls explained that pathways like sterol biosynthesis cannot be understood just in terms of “rate-limiting steps.” Instead, kinetic models capture how enzymes, regulation, and flux interact across the pathway. He showed us how this could help identify which enzymes are worth overexpressing and where bottlenecks might arise.

He also advised us to model efflux pumps not only as sinks but as systems that affect growth and production balance, and suggested that promoter scaling strategies should be guided by models to avoid imbalances when introducing multiple genes.

While integral feedback loops are feasible in bacteria but too ambitious in algae, he encouraged us to think about feedback as a design principle. Finally, he pointed to ODE-based growth and nutrient models as a way to connect molecular strategies to industrial productivity, reinforcing the importance of linking pathway design to real-world sustainability.

Understand:

From Dr. Ingalls, we learned:

  • Kinetic models are more predictive than simple flux-balance or “rate-limiting step” thinking.
  • Efflux pumps should be modeled empirically to capture tradeoffs between sterol output and cell health.
  • Multi-promoter strategies are viable, but only if models ensure balanced expression.
  • Feedback loops are conceptually useful but difficult to implement in algae.
  • Bioprocess models connect molecular engineering to industrial impact.

Synthesize:

We refined our design language to emphasize model-informed predictions rather than intuition about “rate-limiting steps.” Guided by Dr. Ingalls, we paired FBA analysis with kinetic modeling to predict enzyme behaviour.

This not only improved our wet lab and modelling strategy but also reinforced our Human Practices perspective: showing how ergosterol production in algae could be evaluated not only at the molecular level but also in terms of bioprocess efficiency.




These expert conversations gave us both the technical footing and the realistic boundaries to design Sterosaurus. From chassis choice to construct stability, extraction protocols, and modelling, each expert helped us transform ambitious ideas into an implementable strategy, ensuring that our project was not only scientifically sound but also feasible within iGEM’s scope.

Beyond Traditional Human Practices: Community Outreach & Educational Initiatives

In addition to embedding Human Practices into our product and design cycles, our team also developed a set of initiatives and tools that push beyond the expectations of the Human Practices Maturity Model. These efforts were designed not only to advance Sterosaurus, but also to strengthen the global iGEM community’s ability to practice responsible, collaborative science.

6.1 Human Practices Resources & Initiatives

6.1.1 HP Toolkit for Synthetic Biology

Through consultations with the Office of Community Engagement at McMaster University, we were introduced to toolkits developed for researchers to structure engagement with community partners. While valuable, these resources were primarily oriented toward social sciences and lacked specificity for scientific audiences like iGEM teams.

OCE

To address this gap, we adapted and redesigned these resources for use in synthetic biology projects, making them more accessible and actionable for iGEM teams working on technical, lab-driven problems. Our toolkit provides practical guidance for initiating stakeholder conversations, integrating feedback, and mapping community relevance throughout a project’s lifecycle. By sharing it at the Jamboree, we aim to leave behind a concrete, reusable resource that supports responsible collaboration across the iGEM community.

6.1.2 Model UN: Simulating Global Stakeholder Perspectives

We partnered with the McMaster Model UN Society to run a Model UN event themed around our project. This event simulated how international stakeholders, from policymakers to NGOs to industry leaders, might respond to technologies like Sterosaurus in a real-world global forum.

MUN

By role-playing these perspectives, participants highlighted policy barriers, ethical trade-offs, and opportunities for global collaboration that our team might otherwise have overlooked. This exercise extended our Human Practices reflections beyond Hamilton and Canada, pushing us to consider the international implications of sterol biomanufacturing and CO₂ valorization.

We look forward to sharing insights from this year’s Model UN at our Judging Session.

6.1.3 CanGEM Council: Building a National Responsibility Network

Looking outward, we recognized the need for a national dialogue on responsibility within iGEM. Inspired by the iGEM Responsibility Conference, we are organizing the first-ever CanGEM Council, a gathering of Canadian iGEM teams to discuss shared challenges in responsible research and innovation.

The Council will create space for teams to exchange best practices, identify systemic gaps, and develop strategies for embedding responsibility across the Canadian iGEM ecosystem. Our goal is to institutionalize responsibility as a collaborative practice rather than an isolated exercise. The inaugural Council will debut at the Jamboree, setting the stage for an enduring platform that supports Canadian teams long after this season.

6.2 Community-Engaged Educational Initiatives

We encourage judges to explore our Education page, where we showcase the wide range of initiatives our team developed this season. These included our high school internship program, a series of community workshops, and iGEMulate, our flagship event: a large-scale synthetic biology competition designed to give university students the chance to experience the field firsthand.

While these projects fall naturally under the label of “education,” they were never developed in isolation. Each initiative was a direct extension of our Human Practices framework.

Our high school internships, for example, were shaped by our own formative experiences in programs like BASEF, as well as by conversations with students who told us how intimidating science often feels without mentorship.

Similarly, our workshops and competition were refined through two-way dialogues with teachers, local educators, and the Board of Education, who helped us design programming that was accessible, relevant, and responsive to community needs.

Just as importantly, these outreach projects were also grounded in the community and stakeholder conversations that drove our broader Human Practices work. The same themes that shaped our product pivots (accessibility, equity, sustainability, and local relevance) also guided our educational initiatives.

Feedback from participants in successive rounds of workshops directly informed how we scaled and improved them, ensuring that every iteration built on lived experiences rather than abstract ideals.




In this way, our outreach work was not an “extra” or a side project. It was integrated into every stage of Sterosaurus, helping us both share synthetic biology with new audiences and continue learning from those communities in return.

These programs demonstrate how Human Practices can extend beyond lab design or product validation to foster reciprocal, lasting impact through education and empowerment.

Final Considerations: The Last Fossil Layer

SEPTEMBER & OCTOBER 2025

As we approached the close of our Human Practices journey, our team continued to look for ways to sharpen our project and deepen our perspective. These final steps gave us valuable opportunities to connect with leaders in biotechnology, test our ideas with judges, and reflect on how Sterosaurus could stand tall on the Jamboree stage.

7.1 Visit to the Cultivated B Lab

One highlight of our season was a visit to Cultivated B, a Canadian company at the forefront of precision fermentation and cultivated meat. Their facility is home to industrial bioreactors designed for large-scale protein and lipid production.

For our team, seeing this infrastructure firsthand was transformative: it connected the bench-scale bioreactors we used in the lab to the full industrial pipeline, helping us imagine how sterol production could one day scale beyond a student project. Speaking with their team also emphasized the importance of process control, sterility, and reproducibility in biomanufacturing, reinforcing many of the lessons we had heard from our stakeholder interviews.

7.2 iGEM Mini Jamboree Feedback

We also participated in the iGEM Mini Jamboree, a practice competition where teams presented to judges ahead of the Giant Jamboree.

This was an invaluable chance to stress-test our framing. Judges praised our Human Practices work as “excellent” and encouraged us to ensure that our explanations of Sterosaurus remained as clear and accessible as possible for a diverse audience.

This reinforced the importance of tailoring our language and narrative, a theme we had already been refining through our pitch competitions.

Letting Sterosaurus Roar

Looking back, Human Practices was not a parallel track to our lab work. It was the very terrain that shaped Sterosaurus.

Each conversation, from pharmacists to bioethicists to local brewers, added a new bone to the skeleton, while our educational programs, toolkits, and competitions gave it muscle and life. By the end of the season, Sterosaurus had grown from an idea into a project with technical grounding, social resonance, and economic credibility.

As we prepare to share our work at the Jamboree, we see Sterosaurus not just as a student project, but as a model of what responsible synthetic biology can look like: rooted in community, responsive to global needs, and always evolving, just like the fossils that inspire our name.

Final Reflection by Aiman Dhiloon, HP Lead (& iGEMmer since 2020):

I believe deeply in Human Practices. For us, it was not just the story of our project, but the story of why we as iGEMers put in the work, the hours, and the passion. Human Practices is about giving back. Not only to science, but to the communities we are part of.

Through every conversation, reflection, and redesign, our team tried to make choices that were not only technically strong but also socially good. I hope this spirit of responsibility and care carries forward, inspiring future teams to see Human Practices not as an add-on, but as the very heart of why we do iGEM.

References