Software

Use description

ChatGPT

We used ChatGPT to enhance the clarity and accuracy of our written content by correcting grammar and punctuation, particularly for our Wiki texts. Additionally, the tool supported us in debugging code throughout the development of our project.

Perplexity AI

We used Perplexity A Ito assist in our brainstorming sessions and to identify relevant literature on key topics related to our project.

AlphaFold

We used AlphaFold to generate a structural prediction of Cas13, which we then utilized to create visual representations for presentations and other project materials.

Canva

We utilized Canva to design presentations and organize graphics for the Wiki. Our primary use of Canva involved arranging elements and adding simple components like arrows and text. The core graphics, however, were created by our team’s talented graphic designer, Kasia Urbanelis.

SnapGene

We used SnapGene to design, edit, and visualize vector maps and our biological parts throughout the project.

Benchling

We used Benchling to maintain our laboratory notebooks throughout the course of our project.

Microsoft Excel

We used Excel extensively for analyzing SHERLOCK fluorescence readout data throughout our project. Additionally, we created several plots in Excel, which are featured on our Wiki.

Inkscape

We used Inkscape to design our team logo and create various graphics featured on our Wiki.

Gimp

We used GIMP to assist in designing our team logo and creating graphics for the Wiki.

TinkerCAD

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AutoCAD

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PrusaSlicer

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Mathjax

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OpenCV

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NumPy

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Scikit-learn

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Scipy

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Pandas

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Maplotlib

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BLAST+

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Plotly

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MEGA

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Visual Studio Code

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