1. Configure a PCR reaction system according to that follow table;
| Reagent |
Volume |
Concentration |
| PrimeSTAR Max Premix(2X) |
25μL |
1× |
| Primer 1 |
2μL |
0.2-0.3μM |
| Primer 2 |
2μL |
0.2-0.3μM |
| Template |
5μL |
|
| DNase-Free Water |
To 50μL |
|
2.Set the PCR reaction program according to the following table;
| Temperature |
Time |
Number of cycles |
| 94℃ |
3 min |
1 cycle |
| 94℃ |
5 sec |
30 cycles |
| 55℃ |
15 sec |
| 72℃ |
30 sec |
| 72℃ |
5 min |
1 cycle |
3.Prepare 2% agarose gel according to that follow table, and dissolving by microwave
heating;
| Reagent |
Amount |
| Agarose |
12 g |
| 1×TAE |
60 mL |
| Nucleic acid dye EB |
6 μL |
4. When cooled to 50 ℃, add 6 μL of EB, shake it up, pour it into the glue preparation
tank where the comb has been
placed, lay it flat at room temperature, and wait for gel solidification;
5. Put that gel into an electrophoresis tank, and pouring a prop amount of 1 × TAE
electrophoresis buffer solution.
Electrophoresis was performed at 140 V and 100 mA after loading for 25min;
6. Observing and photographing under an ultraviolet lamp after the electrophoresis is
finished;
7. Analyze that optical density with a gel analysis system.
1. Prepare conventional R-250 staining solution and decolorizing solution respectively
according to the following table:
Conventional R-250
Dyeing System
| Reagent |
Amount (100 mL) |
| Coomassie Brilliant Blue R-250(w/v) |
0.25 g |
| Methanol |
45 mL |
| Glacial acetic acid |
10 mL |
| H2O |
Make up to 100 mL (approximately 45 mL) |
Conventional
decolorizing solution
| Reagent |
Amount (500 mL) |
| Methanol |
200 mL |
| Glacial acetic acid |
50 mL |
| H2O |
Make up to 500 mL |
2. Preparing SDS-Page gel according to the method in 4.2 and carrying out
electrophoresis;
3. After gel electrophoresis, take down the gel plate, carefully peel the gel from the
glass plate, and put it into the
staining box/tray; wash the gel surface with deionized water for 1 to 2 times to remove
the electrophoresis buffer
residue (gently operate to avoid tearing the gel);
4. Fixation (SDS and protein dissolution can be removed to improve the signal to noise
ratio of staining): Add
sufficient fixative (methanol/acetic acid/water, typically 45% methanol + 10% acetic
acid + 45% water) to the container
containing gel, and shake gently at room temperature for 30 min. Fixation can be
extended to 1 h or overnight at 4 ℃ to
improve the quality of staining;
5. Discarding the fixing solution, and adding newly prepared Coomassie brilliant blue
staining solution to completely
immerse the gel. Stain on a horizontal shaker at room temperature for 1 to 2 hours;
stain overnight if more sensitive
(do not exceed 24 hours to avoid background increase);
6. After dyeing, discard the dye solution, decolorize with decolorizing solution (40%
methanol, 10% acetic acid, 50%
water) for the first time, and gently shake at room temperature for 30 min ~ 1 H until
the background begins to fade
significantly;
7. Replace with new decolorizing solution, continue to decolorize on the horizontal
shaker, and replace the
decolorizing solution repeatedly for 30 ~ 60 min each time according to the background
and band color development until
the background is low enough and the band contrast is clear. Complete decolorization may
take a few hours to a day or
two (it can be left overnight and decolorized the next day); if you want to see the
bands quickly, you can decolorize
for a short time and take a picture immediately before continuing to refine the
decolorization;
8. After satisfactory decolorization, quickly rinse the gel with deionized water to
remove residual methanol/acetic
acid, then place the gel in a photographic tray and photograph/scan with a gel imaging
system or flatbed scanner; white
light transmission or reflection mode is recommended depending on the equipment, and
record the exposure parameters for
comparison;
9. Photograph/scan and measure band intensity with image software (ImageJ, etc.) For
quantification, taking care to use
the same exposure/scan settings and measure within the unsaturated range.
1. Yeast Total Protein Extraction
(1) Prepare the yeast lysate according to the following table: based on NaOH, add each
reagent in the following table
per 1mL of NaOH, and add protease inhibitors and phosphatase inhibitors according to the
specific requirements of the
experiment (optional);
| Reagent |
Amount |
| 0.1M NaOH |
1 mL |
| 100 mM Sodium β-Glycerophosphate |
11 μL |
| 100 mM Sodium orthovanadate |
11 μL |
| 5M NaF |
11μL |
| 0.5M EDTA |
3 μL |
| 100mM PMSF |
11μL |
(2) Take 200 μL of yeast culture solution, centrifuge (4000 rpm, 30 s) and discard the
supernatant;
(3) Adding a lysis solution into the obtained thallus precipitate, and performing lysis
on ice for 10 min;
(4) Centrifuging (5000 rpm, 1 min), and discarding the supernatant;
(5) Add 80 μL of 1 × loading buffer into the precipitate, mix well, place in a metal
bath (100 ℃, 5min), and store in a
refrigerator at -20 ℃ for later use.
2. Western Blot
(1) Prepare 12% separating gel and 5% concentrated gel according to the following table.
Place the separating gel at
room temperature for 20 ~ 30 min, and place the concentrated gel at room temperature for
about 5 ~ 10 min. For loading,
add 10 μL of protein sample to each well and 3 μL of marker to one well, and be careful
not to generate bubbles.
| 12% separating gel |
| Reagent |
Amount |
| ddH2O |
1.6 mL |
| 30% Polyacrylamide |
2 mL |
| 1.5M Tris-HCl (pH8.8) |
1.3 mL |
| 10%SDS |
50 μL |
| 10%APS |
50 μL |
| TEMED |
5 μL |
| 5% concentrated gel |
| Reagent |
Amount |
| ddH2O |
2.1 mL |
| 30% Polyacrylamide |
0.5 mL |
| 1.0M Tris-HCl (pH8.8) |
0.38 mL |
| 10%SDS |
30 μL |
| 10%APS |
30 μL |
| TEMED |
3 μL |
(2) Electrophoresis: electrophoresis conditions: 75 V, 30 min for the upper concentrated
gel, 110 V, 60 ~ 80 min for the
lower separating gel;
(3) Film transfer: when the electrophoresis is completely finished, the rubber plate is
taken down, the rubber plate is
lightly gummed, and the corresponding PVDF film and filter paper are cut according to
the size; The PVDF membrane was
activated by methanol for about 60 s before membrane transfer. Carry out film transfer
in a mixture of ice and water,
wherein that film transfer voltage is 100 V, and the time is 30 to 50 minute;
(4) Milk blocking and hybridization: Take out the PVDF membrane, wash it with TSBT
solution on a horizontal shaker for 3
times, 10 min each time, block it with 5% skim milk, and block it on a horizontal shaker
at room temperature for 1 H;
(5) After blocking for 1 h, wash with TBST for three times, 5 min each time, and then
incubate with the diluted primary
antibody, and dilute with TBST solution according to the specific instructions of the
antibody; After the primary
antibody was added, it was placed in a refrigerator at 4 ℃ overnight, and the next day
it was placed on a shaker and
washed with TBST for three times, 10 min each time, and then incubated with the
secondary antibody for 1 h, and finally
washed with TBST for three times, 10 min each time;
(6) ECL color development: Add solution a and solution B according to the ECL color
development instructions (Thermo
Fisher ECL), with a volume ratio of 1:1. The gel image processing system was used to
take pictures after the two liquids
were mixed and kept away from light for 1 ~ 2 min at room temperature, and the gray
value of each band was scanned by
its image processing software, and finally the statistical analysis was carried out.