Simple Parts

Part Name Type Measurement Construct Functional Description
hygromycin B phosphotransferase Coding BBa_258TVQA1 Antibiotic resistance gene used for transgenic (selectable marker)
3-Alpha Coding BBa_25RZQWEB Selectable marker for Kanamycin
ori Regulatory BBa_256BV5LT Origin of replication
mgfp5 Coding BBa_25HW560Y GFP-green fluorescence protein
NOS terminator Terminator BBa_K5011003 Terminator
CaMV 355 promoter Regulatory BBa_K3500002 Promoter from Cauliflower mosaic virus, allows for the overexpression of our desired gene.
Source: Levin R.A., Voolstra C.R., Agrawal S., Steinberg P.D., Suggett D.J. and van Oppen M.J.H. (2017) Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2017.01220
HygR Coding BBa_25XUJ1MB Resistance genes in plants
KanR Coding BBa_25G03H8G Resistance gene
oriV Regulatory BBa_25TNU1H Origin of replication
NOS Promoter Regulatory BBa_2501XX5K Promoter
NeoR/KanR Coding BBa_2539Q6N0 Resistance gene

Tested Simple Parts

Part Name Type Measurement Construct Functional Description Tested Does it work? Source
IsPETase-Amy3S Coding Part Codon Optimised for Nicotiana benthamiana Coding BBa_252Q5ZWV Polyethylene terephthalate hydrolase (PETase), an enzyme derived from Ideonella sakaiensis, catalyzes the hydrolytic degradation of PET into BHET and MHET. α-Amylase three signal peptides direct secretion for extracellular degradation activity. ✔️ ✔️ PETase form Ideonella sakaiensis:
UniProt: A0A0K8P6T7 · PETH_PISS1
α-Amylase 3 signal peptides from Teufel et al. (2022)

Composite Parts (Plasmids)

Part Name Type Measurement Construct Reporter Tested Does it work? Functional Description
IsPETase-Amy3S in pGWB2 Plasmid BBa_255C7NHR - ✔️ ✖️ This pGWB2 plasmid contains the synthesized gene allowing PETase and αAmy3SP expression in Nicotiana benthamiana under the CaMV 35S promoter.
IsPETase-Amy3S in pCAMBIA Plasmid BBa_25DB1A28 mgfp5 ✔️ ✔️ This pCAMBIA plasmid expresses PETase and αAmy3SP in Nicotiana benthamiana, driven by the CaMV 35S promoter with a GFP tag for localization analysis.
GFP in pGWB2 Plasmid BBa_25Q6JAYM mgfp5 ✔️ ✔️ This control plasmid expresses GFP for localization analysis and signal peptide validation.

We chose this project because we wanted to address one of the most critical environmental challenges today: microplastic pollution. Microplastics are tiny plastic particles that accumulate in rivers, lakes, and oceans, harming wildlife and entering the food chain. We are motivated by creating a plant that can internally decompose microplastics, breaking them down inside its tissues. Traditional approaches, such as reducing plastic use, switching to other alternatives, or recycling, are essential, but they cannot remove plastics that already exist in the environment. PET, one of the most common plastics, persists in waterways and breaks down into microplastics. Inspired by the discovery of PETase, an enzyme capable of degrading PET, our team decided to explore a plant-based solution. Using Nicotiana benthamiana as a model system, we designed and tested a composite genetic part, IsPETase-Amy3SP, which fuses the PETase enzyme with an α-amylase signal peptide to enable extracellular secretion. By developing a living system, we hope our project will contribute to a sustainable solution, improve environmental health, and inspire future iGEM teams to pursue practical, impactful synthetic biology projects.

Our contribution to the iGEM community lies in creating these new composite parts and in the thorough creation of a new part, IsPETase-Amy3SP, designed for plant-based microplastic degradation. We codon-optimized PETase for plant expression, integrated it into two widely used vectors (pCAMBIA1302 and pGWB2), and provided detailed maps, sequences, primers, and protocols. Each plasmid component and the predicted cleavage site and secretion pathway are explained. By sharing this part and its associated methods, we provide future iGEM teams with a ready-to-use, well-characterized tool for exploring plant-based enzyme expression and secretion, saving time and reducing trial-and-error in experimental setups.

Every member of our team contributed to different aspects of the project, including part design, codon optimization, molecular modeling, cloning strategies, and documentation. Together, we created a resource that improves knowledge regarding plant-based PETase expression and provides a practical, sustainable tool for tackling microplastic pollution. Our work demonstrates the potential of plants as living biofilters and offers a foundation for future teams to innovate, improve, and scale plant-based bioremediation strategies. We hope to inspire and support future iGEM teams, provide a foundation for sustainable microplastic bioremediation, and demonstrate the potential of plants as living biofilters.

Following our localization analysis using our composite part (BBa_25OB1A28), we can establish proof of concept for plant-based PETase expression using our BBa_252Q5ZWV part. With this successful test, we hope our registry paves the way for scalable, sustainable bioremediation strategies that integrate prevention and active degradation of plastic pollution.


References:


  1. Teufel, F. et al. (2022). SignalP 6.0 predicts all five types of signal peptides using protein language models. Nature Biotechnology, 40(7), 1023–1025. https://doi.org/10.1038/s41587-021-01156-3