Parts

Jump to Content

Introduction

Our project aims to construct a highly sensitive lactate-responsive system. [1] We will leverage the "split-TEV" technology, [2] while modifying the LIdR protein [3] and combining it with secreted lactate oxidase (sLOx) to build this system. We anticipate that our system will be capable of degrading lactate in the tumor microenvironment, thereby bringing therapeutic benefits to tumor patients! [4]

To construct our system, we utilized and designed the following types of plasmids: our backbone plasmids (pGL4.35 and pcDNA3.1) (Figure 1), our basic parts (including components of the sensor such as Lac-sensor-N, Lac-sensor-C, TEV-N, and TEV-C) (Figure 2), and composite parts assembled from various basic parts (including all constructed sensor combinations, sLOx, etc.) [5]

zhilipingtu
Figure 1: These are the backbones used for our plasmid construction, and we employed two types of plasmid backbones, including pGL4.35 and pcDNA3.1(+).

Our work primarily focused on the following key aspects:

  1. Using pcDNA3.1(+) as the backbone to carry the proteins we needed to express;
  2. Using pGL4.35 as the backbone to carry our reporter gene;
  3. Achieving the expression and extracellular secretion of secreted lactate oxidase (sLOx);
  4. Constructing various composite parts to build our lactate-responsive system.

Certain components in our system work synergistically to sense lactate and, under high lactate conditions, promote the expression and secretion of the sLOx protein, thereby achieving lactate degradation. To investigate this mechanism, we created a variety of composite parts to further screen for the optimal lactate-sensing components through experiments and design highly efficient lactate-degrading components. These constructs were then inserted into the pGL4.35 and pcDNA3.1(+) backbones, with the aim of developing modular plasmid vectors to achieve the desired functions.

Basic Parts

Registry Name Short Description Category Part Type Basic/Composite
BBa_256TB7H4 Signal sequence of rat FSHB Signal Peptide Coding Basic
BBa_K3734014 LUC Reporter Protein Coding Basic
BBa_254YC81X TEV-N Enzyme Coding Basic
BBa_25JHHT31 TEV-C Enzyme Coding Basic
BBa_25J9Q9U9 LOX Enzyme Coding Basic
BBa_25S1N4JO TEV-cs Protein_Domains Coding Basic
BBa_25FSZ80Q ERT2 Protein_Domains Coding Basic
BBa_25DVCA3A Flag signal tag Coding Basic
BBa_25MD9GE0 GAL4-DBD Protein_Domains Coding Basic
BBa_25SO4BWD VP64-TAD Protein_Domains Coding Basic
BBa_25M4YZFO Lac-sensor-N Protein_Domains Coding Basic
BBa_25GO4K4Q Lac-sensor-C Protein_Domains Coding Basic
BBa_25Z8U6PZ Linker Protein_Domains Coding Basic
Basic parts used in the project
Figure 2: The basic parts we used include 13 types such as TEV components, Lac-sensor components, Linker, VP-64TAD, TEV-cs, Flag, and other regulatory elements. These basic parts were utilized to construct our composite parts.

Type: Coding

We utilized a large number of basic parts categorized as Coding—including Lac-sensor-N, Lac-sensor-C, TEV-N, and TEV-C—to construct the lactate-sensing module of our system. Meanwhile, we also employed components such as ERT2, GAL4-DBD, VP64-TAD, and Luciferase to build corresponding detection systems, which were used to evaluate the performance of our lactate-responsive system. Additionally, we used LOx (lactate oxidase) and the Signal sequence of rat FSHB and Flag tag, to assist in the design of our lactate-degrading module. Specifically, these Coding parts facilitated the secretion of our secreted lactate oxidase (sLOx) out of the cell.

Type: Backbone

Two types of backbones—pcDNA3.1(+) and pGL4.35—were used to carry our basic parts for constructing the various plasmids required in our study. For instance, we designed eight sensor combinations using the pcDNA3.1(+) backbone, and constructed the sLOx-expressing plasmid using the pGL4.35 backbone, which completed the lactate-degrading module of our system.

Composite Parts

Registry Name Short Description Category Part Type Basic/Composite
BBa_25GO5KXN TEV-N+Lac-sensor-N Protein_Domains Coding Composite
BBa_259DROAJ Lac-sensor-N+TEV-N Protein_Domains Coding Composite
BBa_252HRSEX TEV-N+Lac-sensor-C Protein_Domains Coding Composite
BBa_258UGTVO Lac-sensor-C+TEV-N Protein_Domains Coding Composite
BBa_25VORSOC TEV-C+Lac-sensor-N Protein_Domains Coding Composite
BBa_25AQ2GTW Lac-sensor-N+TEV-C Protein_Domains Coding Composite
BBa_259BOA6P TEV-C+Lac-sensor-C Protein_Domains Coding Composite
BBa_253ELPKO Lac-sensor-C+TEV-C Protein_Domains Coding Composite
BBa_25B0LCIO GV2ER Protein_Domains Coding Composite
BBa_25H9P6QH sLOx Protein_Domains Coding Composite
BBa_25EPO21Z LS1.0 Protein_Domains Coding Composite
Composite parts design
Figure 3: This figure illustrates the design of our composite parts using the uploaded basic parts, which include the lactate-sensing components (LS1.0 and Stev-lac-0.1 to Stev-lac-0.6). These specific composite parts serve as the lactate-sensing module for constructing our system.
Additional composite parts design
Figure 4: This figure illustrates the design of our composite parts using the uploaded basic parts, including partial lactate-sensing components (Stev-lac-0.7 to Stev-lac-0.8), the lactate-degrading component (sLOx), and the regulatory component (GV2ER). Together with the lactate-sensing composite parts shown in the previous figure, these components were used to construct our entire system.

Plasmids for lactate sensing:

We constructed plasmids expressing various lactate-sensing proteins using several basic parts, such as Stev-lac-0.1 to Stev-lac-0.8, to complete the lactate-sensing module of our system.

Plasmids for lactate degradation:

We constructed the lactate-degrading module of our system using basic parts including sLOx, Flag, and the signal sequence of rat FSHB.

References

  1. Glancy B, Kane DA, Kavazis AN, Goodwin ML, Willis WT, Gladden LB. Mitochondrial lactate metabolism: history and implications for exercise and disease. J Physiol. 2021;599(3):863-888. doi:10.1113/JP278930.
  2. Wintgens JP, Wichert SP, Popovic L, Rossner MJ, Wehr MC. Monitoring activities of receptor tyrosine kinases using a universal adapter in genetically encoded split TEV assays. Cell Mol Life Sci. 2019;76(6):1185-1199. doi:10.1007/s00018-018-03003-2. Erratum in: Cell Mol Life Sci. 2019;76(19):3915. doi:10.1007/s00018-019-03244-9.
  3. Li X, Zhang Y, Xu L, et al. Ultrasensitive sensors reveal the spatiotemporal landscape of lactate metabolism in physiology and disease. Cell Metab. 2023;35(1):200-211.e9. doi:10.1016/j.cmet.2022.10.002.
  4. Hui S, Ghergurovich JM, Morscher RJ, et al. Glucose feeds the TCA cycle via circulating lactate. Nature. 2017;551(7678):115-118. doi:10.1038/nature24057.
  5. Liu H, Liu Y, Liu S, Wu Y. Simultaneous Monitoring of Intracellular Glucose and Extracellular Lactate in Single Cells to Assess Cell Tumorigenicity. Anal Chem. 2025. doi:10.1021/acs.analchem.5c03740.