Project Description

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Introduction

Every year, 1.3 billion tons of food are discarded worldwide, accounting for more than one-third of all food produced globally. This food waste causes various problems. Carbon dioxide generated through the disposal of food waste accounts for 8 to 10 percent of global greenhouse gas emissions, causing significant environmental damage. And the economic loss from food waste amounts to one trillion dollars annually. Furthermore, while such vast quantities of food are being discarded, a social contradiction exists where hundreds of millions of people suffer from food shortages. (1)

As a local issue in Japan, domestic food loss reached approximately 4.64 million tons in fiscal year 2023. (1) In Japan, it is not uncommon for fruits and vegetables that are perfectly safe and tasty to be removed early from store shelves and discarded while still edible, simply because of minor imperfections like slight bruises or color variations. In addition, strict retail sales and delivery standards create pressure to remove products from store shelves before they reach their actual peak edibility, driving up waste. Our project, PreserVEG, aims to reduce food waste by improving produce safety and enabling the visualization of deterioration.

Background of Food Loss in fruit and vegetables

Over half of food loss occurs in households, where fruit and vegetables account for approximately 45% of total food loss by category. (2) Some of the reasons why produce is discarded include the following factors:

Excessive Focus on Freshness

Despite often being consumed uncooked, microbial contamination in fruits and vegetables cannot be detected by appearance alone. Consequently, freshness is often regarded as an indicator of safety, with the assumption that “fresh = safe.” If safety seems uncertain, disposal is frequently chosen. Particularly in Japan, where the emphasis on freshness is strong (3), households tend to adopt the behavior of “discarding if there is even slight concern.” This preventive disposal directly contributes to increased food loss.

Ethylene-Induced Ripening Progression

Fruit and vegetables can be categorized as climacteric or non-climacteric. Climacteric produce releases ethylene during ripening, increasing respiration rates. This ethylene diffuses into the surrounding environment, triggering a chain reaction of ripening. Consequently, overripening of a single item can accelerate deterioration across an entire box or shelf, significantly shortening the shelf life of all produce.

Miyu Makimura

(4)

Lack of Objective Judgment Criteria

One factor contributing to increased food loss in fresh produce is the lack of clear, easy-to-use criteria for judging deterioration, such as best-before dates or use-by dates. Consequently, we rely on subjective cues like appearance, smell, and texture based on experience to assess deterioration at stores and in homes. On the other hand, objective evaluation methods exist, such as measuring components that fluctuate after harvest, using hardness meters, and analyzing gases like ethylene (6). However, the reality is that these methods are difficult to apply in households, and many distribution settings are due to equipment, cost, and time constraints. As a result, both premature disposal—where produce is discarded prematurely despite still being edible—and late disposal—where signs of deterioration are overlooked—occur, leading to increased food loss of fresh produce. Despite often being consumed raw, microbial contamination in fresh produce cannot be detected by appearance alone.

Our Solution

To solve above problem, we have developed PreserVEG, which is a Cre/loxP-based three-in-one system for climacteric fruits and vegetables. The three key functions are as follows:

Miyu Makimura
1. Protection

Produce sold at supermarkets and other stores is handled by many people during the distribution process. Various bacteria that can cause spoilage, deterioration, and food borne illness adhere to the surface of that produce. Our system produces the antibacterial peptide Nisin Q, which prevents harmful bacteria from proliferating on the surface of produce while also contributing to maintaining quality. This enables a longer preservation of freshness, quality, and safety at high levels.

The Significance of Using “Nisin Q”

Various bacteria adhering to fresh produce are likely to be attached not only during the distribution process but also during the storage period at home. In addition to exposure to hands, the risk of contamination by foodborne illness-causing bacteria can increase depending on storage conditions and locations. For example, S. aureus, one of the most common causes of foodborne illness outbreaks in many countries, is found in refrigerators. (7)

Apples are one of the primary fruits and vegetables we focus on. Research on bacteria adhering to apple surfaces has identified E. coli, S. aureus, and B. cereus present on apple surfaces. Among these, S. aureus and B.cereus have proven difficult to remove from apple surfaces through washing. Preventing the proliferation of these bacteria on fruit and vegetable surfaces could significantly contribute to preventing food borne illness. (8) (9)

The antimicrobial substance we focus on is Nisin Q. Nisin Q exhibits broad antibacterial activity and a wide antibacterial spectrum against Gram-positive bacteria. S. aureus and B. cereus, mentioned above, are types of Gram-negative bacteria. E. coli is a Gram-negative bacterium, and while it is not affected by Nisin Q, more of it can be removed from the surface of produce through washing (8). Furthermore, Nisin Q inhibits the deterioration of produce and contributes to maintaining its quality (10).

Briefly speaking, Nisin Q is a superior version of Nisin A, which is what we commonly refer to as “Nisin.”. Nisin Q possesses the same biochemical characteristics as Nisin A and exhibits a similar antibacterial spectrum. However, Nisin Q demonstrates higher stability than Nisin A under oxidative conditions. This enables it to maintain its antibacterial activity for a longer period. (11)

2. Sensing

Climacteric fruits and vegetables such as bananas, apples, and tomatoes emit ethylene gas and increased ethylene concentration (Climacteric rise) occurs due to ripening. During ripening, which accelerates their own deterioration as well as that of surrounding produce. (12)

We focused on this climacteric rise. By incorporating ethylene-metabolizing bacterial proteins into this system, it becomes possible to detect ethylene gas released at high concentrations. This makes it possible to monitor the degree of deterioration and prevent further spoilage.

Monooxygenase

How to sense ethylene ??

Many ethylene metabolism-related proteins are induced not by ethylene itself, but by its epoxide, epoxyethane. Therefore, detecting fruit and vegetable deterioration requires a process that converts released ethylene into epoxyethane. We engineered a mutant based on the toluene/o-xylene monooxygenase (TOM) from Burkholderia cepacia G4, designed to efficiently convert ethylene into epoxyethane. This enables the detection of ethylene emitted by fruit and vegetable as epoxyethane, allowing for the sensing of deterioration. (13) (14)

3. Visualization

When some produce is deteriorating, the system expresses GFP protein to visibly indicate the detected level of deterioration. This provides clear labeling indicating whether fruit and vegetables are still edible or should be discarded.

Furthermore, by judging deterioration visually and removing degraded specimens, ethylene diffusion can be prevented. In other words, this prevents the accelerated deterioration of surrounding produce. Based on Human Practice, we selected the method of GFP protein expression to prevent discoloration of the produce itself. GFP protein expression can be easily detected by black light irradiation.

System design

The three key functions described above operate as follows through Cre/loxP system:

This system functions in phases through two plasmids: Cre plasmid and loxP plasmid. Under normal conditions, antibacterial peptide Nisin Q is constantly expressed from Cre plasmid. When ethylene is released from produce, Cre plasmid detects ethylene and expresses Cre recombinase, which cuts and removes the Nisin Q sequence from loxP plasmid. Simultaneously, the terminator upstream of the GFP on the loxP sequence is also cut, causing the GFP downstream of the loxP sequence to be expressed and fluorescent.

For more detail about Our system, click here

PreserVEG system design overview

Conclusion

PreserVEG is a simple tool designed to simultaneously provide deterioration visualization and antimicrobial functionality by simply spraying it onto fruit and vegetable. Visualization enables the suppression of early disposal of still-edible produce and the isolation of sources causing chain reactions of overripening. Furthermore, its antimicrobial properties help ensure the safety of produce at retail locations and in households.

The spray format requires no specialized equipment, lowering barriers to implementation. As an easily deployable solution usable at distribution, retail, and household stages, it is expected to contribute to reducing food loss.

Reference

  1. United Nations Environment Programme. *Food Waste Index Report 2024.* UNEP, 27 March 2024. [Link](https://www.unep.org/resources/publication/food-waste-index-report-2024).
  2. Mariam Ghamrawy, Food loss and waste and value chains, Food and Agriculture Organization of the United Nations Cairo,p.11,2019
  3. 農林水産省総合食料局食品産業企画課食品環境対策室,食品ロスの現状とその削減に向けた対応方向について--「食品ロスの削減に向けた検討会」報告の概要, 明日の食品産業, 2009 (3),p. 45-47
  4. Ethylene and the Regulation of Fruit Ripening | University of Maryland Extension https://extension.umd.edu/resource/ethylene-and-regulation-fruit-ripening/
  5. Cocetta G, Natalini A. Ethylene: Management and breeding for postharvest quality in vegetable crops. A review. Front Plant Sci. 2022 Nov 14;13:968315. doi: 10.3389/fpls.2022.968315. PMID: 36452083; PMCID: PMC9702508.
  6. Kazunori OTOBE, Junichi SUGIYAMA, Yuji KUCHI, Firmness Measuring System of Fruits and Vegetables with a Light-Contact Vibrating Probe, Nippon Shokuhin Kogyo Gakkaishi Vol.40, No.11, 792~800 (1993)
  7. Miho Mori et al. Analysis of the Relationship of Microbial Contamination with Temperature and Cleaning Frequency and Method of Domestic Refrigerators in Japan. Faculty of Agriculture. Kindai University, 3327-204, Nakamachi, Nara-shi, Nara 631-8505, Japan. 2020
  8. Savić A et al. Attachment and survival of bacteria on apples with the creation of a kinetic mathematical model. Braz J Microbiol. 2021 Jun;52(2):837-846. doi: 10.1007/s42770-021-00425-2. Epub 2021 Jan 23. PMID: 33484470; PMCID: PMC8105475.
  9. Damien Ballan et al. Diversity of spoilage microorganisms associated with fresh fruits and vegetables in French households. International Journal of Food Microbiology. Univ Brest, INRAE, Laboratoire Universitaire de Biodiversit´e et Ecologie Microbienne, F-29280 Plouzan´e, France. 2025
  10. Yuan, N. et al. Effect of Nisin on the Quality and Antioxidant Activity of Fresh-Cut Pumpkins (Cucurbita moschata Duch.). Horticulturae 2023, 9, 529.
  11. F. Yoneyama et al. Biosynthetic characterization and biochemical features of the third natural nisin variant, nisin Q, produced by Lactococcus lactis 61-14. Laboratory of Microbial Technology, Division of Microbial Science and Technology, Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Fukuoka, Japan, Laboratory of Functional Food Design, Department of Functional Metabolic Design, Bio-Architecture Center, Kyushu University, Fukuoka, Japan. 2008 The Society for Applied Microbiology, Journal of Applied Microbiology 105
  12. Fruit Ripening (After-Ripening) and Ethylene. Hiroshi HYODO. Shizuoka University, Faculty of Agriculture.
  13. Hiroshi Iida, Takahiro Maruyama, Hidetaka Kobayashi, Hitoshi Kakidani, Selective Oxidation of Organic Compounds by Utilizing Toluene Monooxygenases, TOSOH Research&Technology Review Vol.49(2005)p.3-13
  14. Guanwen Hu, Peiqi Zhang, Xinmou Wang,Chunteng Wan, Yiyi Fu,Wa Hung Leung,Zhenyang Lin ,Yangjian Quan, Biocatalytic conversion of ethylene to ethylene oxide using an engineered toluene monooxygenase, Chem. Commun., 2015, 51, 2283-2285

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