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Parts

Overview

This year, TJUSX has designed in a total of 63 parts, including 18 new basic parts and 26 new composite parts. We focused on engineering a probiotic consortium for Parkinson's disease, building modules across four dimensions: targeted colonization, therapeutic effect, cross-species communication, and safety control.

Overview of our wet lab work
Fig.1 Overview of our wet lab work

For targeted nasal colonization, molecular docking identified Lp_0018 as the protein with the highest affinity for olfactory-epithelium N-acetyl heparan sulfate (NaHS). We also achieved co-adhesion between E. coli and Lactiplantibacillus plantarum by expressing antigen--nanobody pairs (Ag2/Nb2 and Ag3/Nb3) to enhance consortium stability.

In the therapeutic module, we expressed 4-hydroxyphenylacetate 3-hydroxylase, glutamate--cysteine ligase, and glutathione synthetase to boost the production of the therapeutic molecules L-DOPA and glutathione, thereby improving probiotic efficacy.

For cross-species communication, we bridged the signaling divide between Gram-positive and Gram-negative bacteria by implementing both AIP- and AHL-based quorum-sensing pathways, enabling bidirectional communication between the two species and using this to regulate cooperative division of labor between L. plantarum and E. coli.

To enhance biosafety, we designed three kill-switch systems: a temperature-sensitive switch for potential escape into external environments, a hypoxia-responsive switch for escape into the intestinal environment, and an inducible emergency-shutdown system for rapid containment.

For more information, you can consult the iGEM Registry to view the sequences and functions of these parts.

Targeted Colonization

Molecular Docking

For targeted nasal colonization, molecular docking identified Lp_0018 as the protein with the highest affinity for olfactory-epithelium N-acetyl heparan sulfate (NaHS).

Co-adhesion

We also achieved co-adhesion between E. coli and Lactiplantibacillus plantarum by expressing antigen--nanobody pairs (Ag2/Nb2 and Ag3/Nb3) to enhance consortium stability.

Therapeutic Module

Enzyme Expression

In the therapeutic module, we expressed 4-hydroxyphenylacetate 3-hydroxylase, glutamate--cysteine ligase, and glutathione synthetase.

Molecule Production

These enzymes boost the production of the therapeutic molecules L-DOPA and glutathione, thereby improving probiotic efficacy.

Cross-Species Communication

Quorum Sensing

For cross-species communication, we bridged the signaling divide between Gram-positive and Gram-negative bacteria by implementing both AIP- and AHL-based quorum-sensing pathways.

Bidirectional Communication

This enabled bidirectional communication between the two species and using this to regulate cooperative division of labor between L. plantarum and E. coli.

Safety Control

Kill-Switch Systems

To enhance biosafety, we designed three kill-switch systems:

  • A temperature-sensitive switch for potential escape into external environments
  • A hypoxia-responsive switch for escape into the intestinal environment
  • An inducible emergency-shutdown system for rapid containment

Containment Mechanisms

These kill-switch systems provide multiple layers of safety control to prevent unintended release and proliferation of engineered probiotics.

Basic Parts

Part Number Name Type New/Existed
BBa_25ZV876L P23+RBS Promoter New
BBa_C0062 LuxR Coding Existed
BBa_25HZYZ00 sppK Coding New
BBa_25PHUFTR sppR Coding Existed
BBa_K5238012 PsppA Promoter Existed
BBa_R0062 Plux Promoter Existed
BBa_B0015 double terminator Terminator Existed
BBa_B0034 RBS(Elowitz 1999) RBS Existed
BBa_25KKHIW8 mRFP1 Coding New
BBa_J23110 J23110 Promoter Existed
BBa_K3352002 T7RBS Promoter Existed
BBa_K1830001 Pnis Promoter Existed
BBa_K1096002 MazF Coding Existed
BBa_25FT6KB9 pRSFT7+RBS Promoter New
BBa_25HK2TNV PBAD+RBS Promoter New
BBa_251JZBTS Lp_0018(OPPA) Coding New
BBa_25VJHAP4 LuxI Coding New
BBa_K3875031 phyb Promoter Existed
BBa_K1096002 mazF Coding Existed
BBa_K566001 pRM Promoter Existed
BBa_25C9ZDIF Cl857 Coding New
BBa_K4252025 R promoter Promoter Existed
BBa_25GW3TKM phIF Coding New
BBa_K1725000 pPhIF Promoter Existed
BBa_250T0ECK HpaBC Coding New
BBa_25LTUP6B EPEA Coding New
BBa_K4765005 Nb2, antiEPEA Coding Existed
BBa_25ALE2RB Intimin N-terminus Domain New
BBa_25LHBCFY P53TA Coding New
BBa_25NM4J6S antiP53TA Coding New
BBa_25EW7GN6 lac promoter with lacO Promoter New
BBa_25RNUW5M Signal Peptide Domain Domain New
BBa_25N6O5VS gshAB Coding New
BBa_K3457003 T7 promoter Promoter Existed
BBa_K731721 T7 terminator Terminator Existed

Composite Parts

Part Number Name New/Existed
BBa_251ZKH0I P23-LuxR-Plux-RFP New
BBa_25NAU1MZ J23110-LuxR-Plux-RFP New
BBa_2516O9Z7 Pnis-MazF New
BBa_252WNW4D PBAD-MazF New
BBa_25QCL5YP P23-RFP New
BBa_25759N0Q phyb-mazF New
BBa_25MAE5S2 pRM-Cl857 New
BBa_25TMM0K9 pR-phIF-pPhIF-mRFP1 New
BBa_2597IAFW pR-phIF-pPhIF-mazF New
BBa_25HWXV4K J23119-EYFP New
BBa_25QEE5IL J23100-sfGFP New
BBa_25KL3TK9 Escherichia coli EcN Adhesion Plasmid (Nb3) New
BBa_25ABOYRF Escherichia coli EcN Adhesion Plasmid (Nb2) New
BBa_25HJ1QZT Escherichia coli EcN Adhesion Plasmid (Ag2) New
BBa_25HLI67J Escherichia coli EcN Adhesion Plasmid (Ag3) New
BBa_25LEZMOF Lactobacillus plantarum WCFS1 Adhesion Plasmid (Ag2) New
BBa_25LFMGW2 J23119-mGFP New
BBa_25JJOW0K T7-gshAB New
BBa_25PO6NQW T7-hpaBC New

QS Toolkit

What problem do we solve?

Because Gram-negative and Gram-positive bacteria "speak different languages"---AHLs for the former and AIPs for the latter---engineering communication between them remains difficult, which in turn constrains programmable control of synthetic consortia. Based on our literature search, as of October 7, 2025, we did not identify any published report achieving engineered, programmable bidirectional communication between Escherichia coli and Lactiplantibacillus plantarum within a single system.

What do we do?

This year, the TJUSX team developed a quorum-sensing--based, cross-species, bidirectional communication toolkit to regulate division of labor and cooperative interactions in a synthetic consortium. Signaling from Lactiplantibacillus plantarum to Escherichia coli uses an AHL channel, whereas signaling from E. coli to L. plantarum uses an AIP channel. As illustrated, the collection comprises four devices: (i) L. plantarum AHL producer, (ii) E. coli AHL sensor, (iii) E. coli AIP producer, and (iv) L. plantarum AIP sensor.

Schematic of our bidirectional Gram-negative/Gram-positive bacterial communication system
Fig.2 Schematic of our bidirectional Gram-negative/Gram-positive bacterial communication system

We completed construction and validation of this collection as a functional system and further demonstrated its practical application; additional details are available in the iGEM Registry.

Part Collection

QS Toolkit for Gram-Positive--Gram-Negative Communication

Part Number Name Type New/Existed
BBa_25GPNP6D Cva15-sppip Basic New
BBa_K4579007 CvaAB Basic Existed
BBa_25NWT5WX J23100-LuxR-Plux-RFP Composite New
BBa_25DRAURP P23-LuxI Composite New
BBa_25MKYYSG pSIP403-PsppA-mRFP1 Composite New
BBa_25GU7QJK T7-CvaAB Composite New
BBa_25W69G0L PBAD-CvaC15-sppIP Composite New
BBa_25T9VCEJ pSIP403-PsppA-Lp_0018 Composite New
BBa_253V93J6 J23100-LuxR-Plux-HpaBC Composite New
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