Hardware

Hardware in iGEM should make synthetic biology based on standard parts easier, faster, better, or more accessible to our community.

Best Hardware

This is a prize for the team that has developed a piece of hardware for synthetic biology. Hardware in iGEM should make synthetic biology based on standard parts easier, faster, better or more accessible to our community. Did your team make a sensor to help teams characterize parts? Did you make a robot that can help teams perform experiments or do cloning more easily? Strong competitors for this prize will demonstrate utility, user testing, and easy reproducibility.


Visit the Special Prizes page for more information.

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Figure: Algae-based dry lab experiment process

List of Hardware Parts

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Real-Time Clock

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ESP-32 Microcontroller

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Microphone

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Turbidimeter

Overview


AEI Test Content Upload Testing In addition to encouraging teams to work with DNA parts and build biological devices in the lab, iGEM also encourages other types of technical solutions for synthetic biology. This can include physical devices (hardware) related to robotic assembly, microfluidics, low-cost measurement devices, to name a few examples. There are many exciting opportunities for hardware innovation in synthetic biology.

Microalgae Growth Phases and Impact of Audible Sound

Growth Phases

Algae growth occurs in five distinct phases:

Impact of Audible Sound

Audible sound significantly enhanced the growth rate of Picochlorum oklahomensis during the exponential phase (days 3 to 7). Treated cultures reached the stationary phase 4 days earlier than controls (26 days vs. 30 days).

The highest dry biomass concentration was achieved at 2200 Hz, a frequency common in natural environments, suggesting its optimal effect on enhancing algal biomass production.

Oil Production

Although the average oil content of biomass remained similar between treated and control groups, oil yield per unit volume increased significantly in sound-treated groups. The highest oil content of 27.5% was recorded at 2200 Hz.

Effect of Audible Sound on Haematococcus pluvialis

The blues genre music "Blues for Elle" significantly enhanced the growth and productivity of Haematococcus pluvialis compared to "Far and Wide" and a no-sound control group.

This genre improved cell division and metabolism by influencing:

Growth and Productivity Data

Growth rate under "Blues for Elle" increased biomass productivity by 50.94% or 3.467 × 10² cells/mL/day over 22 days.

pH and Proton Dynamics

Audible sound treatments accelerated pH reduction due to increased proton release during photosynthesis.

Supplementary Study

According to this study:


Local and Global Systems (Vincent and Daniel)

Local System Design

a. Green Algae Carbon Reduction

CO₂ is passed through the algae reactor. Through photosynthesis, green algae synthesize glucose to reduce atmospheric carbon:

12H2O + sunlight → 12H2 + 6O2  [light reaction]
12H2 + 6CO2 → C6H12O6 + 6H2O  [carbon reaction]
    

b. Air Inlet

c. Water Entrance

d. Discharge Port

e. High Rendering LED Light Tube

Solar panels and biomass energy are used to power LED lights inside the reactor. This allows:

Modifications to the Design

System Advantages


Algae Growth Control System - Sensor and Control Action Plan

1. Audio

Type: Control + Sensing

Action Plan:

Parameters:

2. Light

Type: Control

Action Plan:

Parameters:

Potential Issue: Sunlight may boost growth of other microorganisms. Specific LED wavelengths can help prevent biohazard contamination.

3. Turbidimeter

Type: Sensing

Action Plan:

Frequency:

Every 6 hours.

4. Temperature

Type: Control + Sensing

Action Plan:

Frequency:

Every 5 minutes.

5. pH Level

Type: Sensing

Action Plan:

Frequency:

Once per day.

6. Power Consumption

Type: Sensing

Action Plan:

Frequency:

Every 5 minutes.

System Integration

By combining the code we wrote with the devices on the breadboard, we eventually concluded that there are three essential components of the breadboard: the power supply, the audio input and output, and the time module that controls the temperature and the turbidimeter.

ESP-32 Power Supply System

ESP-32 Power Supply System

I’ve learned how to connect different devices (OLED display, INA3221, and the power supply) to the main ESP-32. The main function of the system is to support other devices on the breadboard with power.

OLED Display

The OLED display shows the voltage, current, and power of other devices, which update every second. This is done through the help of the INA3221, which measures the voltage and current on all devices, then sends the data to the OLED display.

INA3221 and Power Supply

The power supply is connected mostly to the INA3221, while other connections go to the three ESP-32 units. There is a positive and a negative wire labeled on the power supply as VDD and GND. VDD is the positive terminal and stands for Voltage at the Drain, while GND is the negative terminal and stands for Ground.

Every device has its own VDD and GND. If you misconnect the wires, the entire system could be damaged or burnt out.

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Figure: Power module circuit diagram

Sensor Module for Algae Tank

Sensor Module for Algae Tank

This part of the module consists of six different components: Light Intensity Sensor, SD Memory Card, Time Module, Thermometer, Turbidimeter, and OLED Display, all connected to the ESP32 microcontroller.

This module serves as the stats collecting center, gathering various types of data from the algae tank. The collected data is displayed on the OLED display and uploaded to IFTTT, a cloud drive.

Components and Functions

GY-30 Light Intensity Sensor

Located at the top left in the setup, the GY-30 module detects the surrounding light intensity. Once measured, the data is sent to the ESP32 and then displayed on the OLED display.

SD Memory Card

The SD card gathers and stores all collected information and later uploads it to IFTTT for cloud storage.

DS1302 Time Module

The DS1302 module functions as an internal clock for the system. It allows other components to operate based on time intervals and ensures the system follows the programmed schedule.

Thermometer

The thermometer detects the water temperature and sends the data to the ESP32, which then displays it on the OLED.

OLED Display

The OLED screen presents all information sent from the ESP32, including light intensity, temperature, turbidity, and more.

Turbidimeter

Although the turbidimeter may appear simple, it poses a significant challenge. To prevent malfunction caused by the saltwater in the tank, air pockets inside the sensor must be filled with epoxy resin. After measuring turbidity, the sensor sends the data to the ESP32, which then forwards it to the OLED display.

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Figure: Algae tank sensor module circuit diagram

Audio Module

Audio Module

The audio module consists of five main components: Microphone, Speaker, MP3 Player, Volume Control, and an OLED Display, all connected to the ESP-32 microcontroller.

This system performs two main functions: music playback and sound detection.

Music Playback

To play music, an SD card is inserted into the MP3 player. The MP3 player is connected to the volume control module, which is then connected to the speakers. It is also connected to the ESP-32 microcontroller, which sends track information to the OLED display for visual feedback.

Sound Detection

For sound detection, the microphone sends audio signals to the ESP-32 microcontroller. The microcontroller processes this information and sends it to the OLED display. Additionally, it connects to Channel 3 of the power meter, allowing the power module to monitor the system's power consumption during operation.

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Figure: Audio module circuit diagram