Parts

Discover the power of RNA with our part collection.

The SKIPPIT part collection gives you all the tools needed to control translation at the STOP codon site. It contains the parts that compose our switch, as well as parts to test and characterise it, offering a full starter kit for anyone who wants to experiment with this brand new technology.

For the last 50 years, transcription-level control has dominated gene and protein expression regulation. To go beyond, we need more tools that allow further, finer, control over our genes, and that means expanding the foundations of synthetic biology. SKIPPIT has revolved from the start to doing just that, which we have accomplished by generating a new tool for translation-level control.

Our part collection is composed of multiple basic parts, which constitute our Composite parts. These can either be swiches or Device parts to test said swiches. Overall, the University of Barcelona 2025 iGEM team offers widely versatile, documented, tools for anyone interested in exploring the world of translation-level control. You can find our part collection here.

Highlighting innovation

Throughout the last 21 years of the iGEM competition, the Selenocysteine Insertion Sequence (SECIS) has not once been the focus of an iGEM project. As a matter of fact, no project before has revolved on the study and implementation of STOP codon readthroughs, whatsoever. They have only been used occasionally in experiments to test other parts.

It is undeniable that SKIPPIT is the first of its kind in the iGEM competition, and that it is paving the way to a new approach of controlling protein expression, through unique control of translation. We are pushing boundaries that the iGEM competition did not even know existed.

We are the first team to publish the SECIS sequence to the iGEM registry. This part is so intricate and unique in its functionality and activity, that we needed the iGEM registry team to add a new “type” to better classify this part. It is, after all, a 3’-UTR sequence that regulates ribosomal function.

Although hundreds of teams have developed RNA switches and riboswitches, only some have been able to code their own software model to design them, and even less have had the time to test their creation in the wet lab. At SKIPPIT we have been able to do all of the above in human cells, to add to its complexity. The result has been the creation of a swich that allows the user to control a STOP codon readthrough’s activity, with a dual-protein regulatory approach. This swich is particularly special due to how far the swich sequence can be from its action site. This means that the swich doesn’t need to be translated to perform its function, and that it will not affect the protein sequence. To highlight just how innovative this technology is, there is no previous literature describing the existence of a STOP codon readthrough RNA switch. We hope that our project can inspire many of the future iGEM teams to push the boundaries of what is known, and to create brand new technologies that define the future of synthetic biology.

New Basic Parts

The SKIPPIT STOP-Codon Readthrough Switch was designed using our software tool TADPOLE, and as such it is composed of three main parts:

  1. Conformational RNA Element (CRE): RNA elements which suffer a structural shift when exposed to a certain stimulant, such as an aptamer, miniRNA or a temperature-sensitive motif.
  2. Functional RNA Element (FRE): RNA elements whose catalytic or regulatory activity relies on their secondary structure, such as a frameshift, ribozyme or STOP codon readthrough element.
  3. Linker: Designed by our software tool and model TADPOLE, that considers the optimal energy of secondary structures to generate these synthetic linkers.





We have categorised the basic parts in our collection as CREs, FREs, Linkers, Characterising, and Structural. The “type” corresponds to the part type in the iGEM registry.

Registry Code Part name Category Type Status
BBa_25ERMNVD Selenocysteine Insertion Sequence (SECIS) DIO2 FRE 3’UTR ★New part
BBa_25I8BQT4 7 bp Mutated Selenocysteine Insertion Sequence (SECIS) DIO2 FRE 3'UTR ★New part
BBa_25M42989 Theophylline Aptamer Theo-ON-5 CRE Oligo ★New part
BBa_257J2532 -1 Programmed Ribosomal Frameshift (-1 PRF) with pseudoknot FRE Coding ★New part
BBa_254KT5ER SKIPPIT Stop Codon Readthrough (SCR) Riboswitch Linker 5 Linker Oligo ★New part
BBa_25SNFRFI SKIPPIT Stop Codon Readthrough (SCR) Riboswitch Linker 7 Linker Oligo ★New part
BBa_25PPFFX9 SKIPPIT Stop Codon Readthrough (SCR) Riboswitch Linker 8 Linker Oligo ★New part
BBa_25N3K8W1 SKIPPIT Stop Codon Readthrough (SCR) Riboswitch Linker 9 Linker Oligo ★New part
BBa_256AS085 Renilla Luciferase Characterising Coding ★New part
BBa_25959XS7 Firefly Luciferase Characterising Coding ★New part
BBa_K3244020 2ِA Cleavage Structural Coding Previously existing part
BBa_25UBVI8J T2A peptide 5’ Structural Coding ★New part
BBa_25K0VQDJ Selenocysteine Insertion Sequence (SECIS) DIO2 5’ context Structural 3’-UTR ★New part
BBa_25A9DKGU TGA STOP codon readthrough prone context Structural Coding ★New part
BBa_K5121007 T7 Promoter from Reb1 Cleaned Structural Regulatory Previously existing part

Composite Parts

Our composite parts are categorised into riboswitches and measurement devices.

Registry Code Part name Category Type Status
BBa_25TC7KVP STOP Codon Readthrough theophylline riboswitch with Linker 5 Riboswitch Riboswitch ★New part
BBa_25ZKOD5Q STOP Codon Readthrough theophylline riboswitch with Linker 7 Riboswitch Riboswitch ★New part
BBa_25ZNE3G6 STOP Codon Readthrough theophylline riboswitch with Linker 8 Riboswitch Riboswitch ★New part
BBa_25FU0LGZ STOP Codon Readthrough theophylline riboswitch with Linker 9 Riboswitch Riboswitch ★New part
BBa_258LW76F -1 Programmed Ribosomal Frameshift theophylline induced riboswitch Riboswitch Riboswitch ★New part
BBa_25XJI9B6 -1 Ribosomal Frameshift rate Dual-Luciferase measurement device Measurement device Measurement ★New part
BBa_25MG0QVO STOP Codon Readthrough rate Dual-Luciferase measurement device Measurement device Measurement ★New part