Professor Liu Zheng2025.09.05
Prof. Liu is renowned for his research and teaching in biochemical engineering, with focuses on protein engineering, nano-enzymes, and soil bioremediation. He has published over 190 papers and received numerous national awards for teaching and research. The conversation revolved around three key themes: 1. Wet Lab: Prof. Liu emphasized the importance of "Learning by Doing." He commended the iGEM project for enabling students to break away from the traditional "learn first, do later" model by engaging early with complex biological concepts through hands-on practice. This process of continual troubleshooting leads to a deeper understanding of knowledge essence and fosters interdisciplinary innovation. 2. Science Storytelling: He highlighted that good scientists must also be good storytellers. A compelling narrative should be grounded in real scientific problems and societal needs, supported by solid experimental data, and communicated through accessible language and vivid analogies to make science relatable and engaging for a broader audience. 3. Learning Methods & Research Significance: Prof. Liu inspired students to find joy and purpose in research by aligning personal interests with societal needs. He specifically pointed out that the team's goal of enhancing cellular robustness to save energy and reduce carbon emissions aligns with the national strategy of green and low-carbon development, demonstrating the great potential of synthetic biology in solving real-world problems. This dialogue provided the team with not only practical guidance on experimental design but also a deeper understanding of the role of science communication and social responsibility in research
Professor Li Jinliang
2025.09.05
Tsinghua University's iGEM team, Tsinghua-M2025, held an enlightening dialogue with Professor Li Jinliang from the School of Economics and Management on September 5, 2025. Prof. Li is an alumnus of Tsinghua SEM, holding a Ph.D. in Finance from Syracuse University and the CFA designation. He currently serves as the Director of the Office of International Cooperation and Exchange at Tsinghua University, Director of the Hong Kong, Macao, and Taiwan Affairs Office, Vice Chairman of the Beijing Returned Overseas Chinese Federation (elected 2024), and Dean of the Institute for Industrial Innovation and Finance at Tsinghua. He possesses profound expertise in finance, management, and innovation. The discussion centered on the industrialization potential and commercial value of the team's synthetic biology project. From a management and investment perspective, Prof. Li provided insightful and straightforward advice on the project's technical core, application scenarios, and marketization path.
1. Technical Discussion
The team introduced their designed "tri-gene oscillator" system, where genes A (anti-high temperature), B (anti-high osmosis), and C (anti-oxidation) regulate each other to enhance yeast's comprehensive resistance under stress. Prof. Li meticulously inquired about the technology's innovation, stability, and replicability, emphasizing that clear technical barriers are the foundation of commercial value.
2. Redefining the Value Proposition: From "Energy Saving" to "Insurance"
The team's initial value proposition was energy savings for the fermentation industry. Prof. Li keenly pointed out that saving on water and electricity might not be the core pain point for factories, and its economic value could be limited. He creatively proposed a more compelling direction: positioning the project as a "genetic insurance" mechanism. The core value of the project is not to enable yeast to work efficiently at high temperatures for extended periods but to address sudden incidents (such as power outages or cooling system failures causing temperature spikes). This prevents the complete loss of entire yeast batches worth hundreds of thousands of yuan, thereby avoiding major production accidents and economic losses. The market logic of the project lies in the fact that this "insurance" function can save factories the costly investment in backup emergency systems (such as self-provided generators) or compensate for the lack of corresponding insurance markets. Its economic value is easier to quantify and more likely to be accepted by the market.
3. Industrialization Path and Suggestions
Professor Li outlined the essential tasks the team must complete to move toward industrialization: It is necessary to quantitatively verify through experiments how much the survival and recovery rates of the modified yeast have improved compared to ordinary yeast under specific high temperatures (e.g., 39°C). This data is key to persuading the market. It is essential to verify whether the introduction of foreign genes affects the normal production efficiency and final product quality (e.g., carotenoids) of the yeast.The team is advised to investigate the market size, number of factories, and the average loss from a typical production accident in the target industry (e.g., carotenoid or alcohol production) to estimate the potential market value of this "insurance" technology. Prof. Li encouraged the team, noting that a good idea, like "boiled water is beneficial for health," derives its value from universal applicability. He advised the team to focus on the clear value proposition of "risk prevention" and support this story with solid data. This dialogue provided the Tsinghua-M team with a crucial business thinking framework for transitioning from lab research to potential market application.
Professor Zhang Chong
2025.09.07
Professor Zhang Chong has long been dedicated to the design and construction of high-performance industrial microbial strains. He has proposed and implemented a novel strategy for strain development driven by high-throughput genotype-phenotype association (HT-GPA) data, possessing profound academic expertise and extensive industrial experience in the field of green biomanufacturing. He has published over 60 papers in internationally renowned journals such as Nature Chemical Biology and Science Advances, with multiple invention patents successfully translated into practical applications widely used in industrial fermentation and biomedicine. This dialogue focused on the design concept, technical pathway, and industrialization potential of the team’s "Intelligent Saccharomyces cerevisiae Stress Resistance System." From the perspective of synthetic biology’s fundamental logic and industrial application, Professor Zhang provided valuable suggestions regarding the project’s scientific rigor, technical feasibility, and practical implementation.
1. Conceptual Construction: From Interdisciplinary Analogy to Biological Essence
The team attempted to use the concept of "pulse condition" in traditional Chinese medicine as a metaphor for the dynamic response behavior of yeast under stress. Professor Zhang acknowledged the inspiration of interdisciplinary analogies but emphasized that any metaphor must be grounded in solid molecular biology. He advised the team to clearly explain the quantitative relationship between "stress response" and core indicators of life activities (such as energy metabolism and redox status), moving beyond metaphorical descriptions to delve into mechanistic explanations.
2. Demand Positioning: Industrial Scenarios Require Quantification and Specificity
The team initially proposed "stress resistance" as the primary industrial value of the project. Professor Zhang pointed out that industrial demands must be specific and quantifiable. He recommended that the team define the specific conditions of "stress"—such as precise temperatures for heat stress and concentration thresholds for ROS stress—and analyze the frequency, timing, and actual impact of these conditions in real fermentation processes. Only by quantifying the problem scenarios can the practical value and applicability of the technical solution be clarified.
3. Project Explanation: From Molecular Mechanisms to System Integration
After listening to the team’s introduction of the "triple oscillator" system, Professor Zhang suggested starting from the most fundamental biological logic. He advised first clearly explaining the molecular input-output mechanisms of each stress-resistant circuit before integrating them into a complex system. He emphasized that "thoroughly understanding one circuit is more important than pursuing an overly ambitious and comprehensive story," encouraging the team to focus on in-depth validation and optimization of a single circuit.
4. Ethics and Safety: Balancing Responsibility and Risk
Professor Zhang particularly reminded the team to prioritize ethical and biosafety considerations in synthetic biology projects. He recommended establishing clear laboratory handling standards and procedures for genetically modified yeast, as well as conducting ethical risk assessments for potential future application scenarios, reflecting a commitment to responsible innovation.
Professor Zhang encouraged the team to support their project narrative with solid data and clear logic, focus on real industrial pain points, and transition from "what can be done" to "what is useful." He provided essential scientific guidance and a conceptual framework for advancing synthetic biology from the laboratory to industrialization.
Professor Ma Yuchun
2025.09.08
On September 8, 2025, the Tsinghua University iGEM team Tsinghua-M had the privilege of engaging in an in-depth dialogue with Associate Professor Ma Yuchun from the Department of Computer Science and Technology at Tsinghua University. The discussion centered on dry-lab modeling and the application of interdisciplinary methods in the intelligent yeast project. Professor Ma has long been dedicated to research in computer algorithms, artificial intelligence, and high-performance computing. In both teaching and research, she particularly emphasizes interdisciplinary integration and the cultivation of innovative thinking. She has received numerous honors, including the Tsinghua University Teaching Excellence Award and the First Prize in the Young Teachers Teaching Competition. This dialogue focused on the modeling approach of integrating "Traditional Chinese Medicine concepts with artificial intelligence" in the team's project, as well as the current technical challenges faced in dry-lab experiments. From the professional perspective of artificial intelligence and pattern recognition, Professor Ma provided profound insights and practical advice on issues such as the "pulse condition" analogy, small-sample learning, and classification boundaries within the project.
1. Integration of Concepts: From "TCM Concepts" to "AI Pattern Recognition"
The team attempted to use the Traditional Chinese Medicine concept of "pulse condition" as an analogy for the dynamic patterns of yeast gene expression and hoped to achieve state classification through machine learning. Professor Ma acknowledged the interdisciplinary inspiration of this approach but also pointed out that borrowed concepts must serve the core scientific problem. She emphasized that "pulse condition" is essentially a form of pattern recognition, methodologically similar to machine learning—both rely on data and empirical inference. However, the team needs to more clearly articulate how TCM mindset such as "regulating" and "preventive treatment"can substantively guide model construction and system design, rather than remaining merely at the terminological level.
2. Small-Sample Learning: Drawing on TCM Classification Wisdom to Address Data Scarcity
In response to the team's issue of limited wet-lab data, which is insufficient for traditional machine learning models, Professor Ma suggested leveraging the classification approach of TCM under small-sample conditions. TCM uses theoretical frameworks and expert experience to categorize complex pulse conditions into a limited number of classes. This "rules + judgment" model is more suitable for the team's current data scale. She further indicated that small-sample learning methods from image classification and reinforcement learning could be incorporated to enhance the model's generalization ability without relying on big data.
3. Modeling Methods and Algorithm Optimization
Regarding the problem of slope fluctuation (delta parameter) caused by noise in parameter fitting, Professor Ma advised the team to conduct extensive research on various fitting algorithms and adopt a phased, multi-algorithm integration strategy to enhance model robustness. Additionally, in response to concerns about vague classification boundaries and reliance on manual annotation, she encouraged the team to define clear classification criteria and draw on semi-supervised and weakly-supervised learning ideas to reduce dependence on large amounts of labeled data. Professor Ma concluded by noting that the "i" in iGEM could also stand for "Intelligence." She encouraged the team to genuinely integrate artificial intelligence into the project narrative while maintaining clarity in scientific concepts and logical rigor, thereby achieving a leap from cultural inspiration to technical feasibility. This exchange provided valuable technical perspectives and methodological guidance for the team in dry-lab modeling and interdisciplinary integration.
Associate Professor Xie Zhen
On September 27, 2025, students from the Tsinghua-M 2025 iGEM Human Practices team visited the FIT building to discuss their project with Associate Professor Xie Zhen from the Institute of Information Processing at Tsinghua University. The discussion focused on further refining the project design, with particular emphasis on how to achieve industrial implementation.
First, we engaged in a detailed exchange with Professor Xie regarding the project overview and wet-lab design, specifically introducing the triple oscillator and the two-strain system, while paying close attention to the feasibility of practical application. Professor Xie gave full affirmation to our project and provided two highly valuable suggestions. Firstly, Professor Xie suggested we focus closely on the genetic components used, especially those related to transcription, to measure amplitude with higher precision and reduce uncontrollable random errors. Secondly, he introduced us to a novel oscillator design. As an application of a "sponge effect," this oscillator incorporates a buffer plasmid to provide more binding sites for transcription factors, thereby reducing the instability of the oscillator. Both of these new perspectives provided significant inspiration for our team. Next, we presented some of our current confusions to Professor Xie. Q: If our product is to be implemented, what key aspects should we consider? A: The most important consideration is industrial demand. While the current project is an excellent conceptual design for the iGEM competition, practical implementation requires considering real-world scenarios, such as the relatively low probability of stress incidents in industry and whether the design might affect production yield. Q: Our project currently faces the issue of limited regulatory methods. What suggestions do you have in this regard? A: CRISPR is an excellent molecular tool that can be used to introduce genes or regulatory elements. Q: The fitting results of our current dry-lab work are not ideal due to the small sample size of data. What suggestions do you have regarding this? Also, what are your views on the prospects of AI and synthetic biology integration? A: I believe a small amount of data can be sufficient. You could try simulations under various conditions and use precisely measured real data for modeling, for instance, accounting for differences in the properties of different fluorescent proteins. AI currently has many uses, such as designing small molecules, proteins, and RNA, all of which could be applied in the field of synthetic biology in the future. This exchange with Associate Professor Xie Zhen provided crucial guidance for our project. On the technical level, his suggestions regarding the precision of genetic components and the design of novel oscillators pointed the way toward optimizing system performance. On the application level, his insights into practical industrial needs and diverse regulatory tools like CRISPR prompted the team to think more deeply about the core challenges of translating the project from concept to reality. This discussion deepened our understanding of the engineered essence of synthetic biology and emphasized the importance of application-oriented research.