1. The construction of a plasmid
2. Protein expression
3. Functional test
Main experimental instrument:
|
Experiment equipment |
Experiment reagent |
|
Balance |
Tryptone |
|
Weighing paper |
Yeast extract |
|
Volumetric flask |
NaCl |
|
Cylinder |
Agar |
|
Autoclave |
DDwater |
Process:
1.2 Allocation of antibiotics Amp+ and SmR
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Balance |
DDwater |
|
Cylinder |
Amp+ |
|
Centrifuge tube |
|
|
Sterilizing table |
|
|
UV light |
|
|
Culture tube |
|
|
Sterilizing filter |
Process:
1.3 Culture bacteria—PK, EPDH, and PTase
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Bechtop |
LB medium |
|
UV lamp |
PK, EPDH, and PTase |
|
Shaker |
Process:
1.4 Extract the plasmid
Main experimental instrument:
|
Experiment equipment |
Experiment reagent |
|
Centrifugal machine |
PTase bacterial liquid |
|
Centrifuge tube |
SP1、SP2、SP3 |
|
Adsorption column |
Wash Solution |
|
Elution Buffer |
Process:
1.5 PCR Procedure
Main experimental instrument
|
Experiment equipment |
Experiment reagent |
|
PCR Tubes |
Primer solution |
|
PCR machine |
DDwater |
|
Centrifugal machine |
Primestar mix |
|
Turbine mixer |
DNA template |
Process:
PCR System Setup (Configuration)
|
Component |
Volume (µL) |
Component |
Volume (µL) |
Component |
Volume (µL) |
Component |
Volume (µL) |
Component |
Volume (µL) |
Component |
Volume (µL) |
Component |
Volume (µL) |
|
Mix |
25 |
Mix |
25 |
Mix |
25 |
Mix |
25 |
Mix |
25 |
Mix |
25 |
Mix |
25 |
|
Gut1-F |
2 |
Gut2-F |
2 |
PTase-F |
2 |
EPDH-F |
2 |
pET-R |
2 |
PK-F |
2 |
TPL1-F |
2 |
|
Gut1- R |
2 |
Gut2- R |
2 |
PTase-R |
2 |
EPDH-R |
2 |
pET-F |
2 |
PK-R |
2 |
TPL1-R |
2 |
|
GUT1 |
2 |
GUT2 |
2 |
PTase |
2 |
EPDH |
2 |
PET |
2 |
PK |
2 |
TPL1 |
2 |
|
DDwater |
19 |
DDwater |
19 |
DDwater |
19 |
DDwater |
19 |
DDwater |
19 |
DDwater |
19 |
DDwater |
19 |
PCR Program (Temperature Settings):
|
Temperature |
Time |
|
··98°C |
10min |
|
98°C |
30ses |
|
60°C |
30ses |
|
72°C |
2min30sec |
|
72°C |
10min |
Repeat steps 2–4 for 30 cycles.
1.6 Measure the concentrations of EPDH, Ptase, and PK using Nanadrop
Main experimental instrument
|
Experiment equipment |
Experiment reagent |
|
Nanodrop measurement cuvette |
DDwater |
|
PK、 EPDH、PTase、PET |
Process:
EPDH: 57.1 ng/μL
PTase: 51.2 ng/μL
PTase: 57.3 ng/μL
PK: 20.1, 18.3 ng/μL
1.7 Gel Preparation
Main experimental instruments
|
Experiment equipment |
Experiment reagent |
|
Balance |
Agarose |
|
Erlenmeyer flask |
TAE Buffer Solution |
|
Microwave oven |
Nucleic acid dye |
|
Plastic mould manufacturing |
Loading Buffer |
|
Agarose gel electrophoresis tank and power supply |
15K Marker |
|
Turbine mixer |
Buffer B2 |
|
Gel imaging system |
Wash Solution |
|
Knife |
Elution Solution |
|
Water bath |
Homologous recombinase buffer |
|
Centrifugal machine |
|
|
Spin column |
|
|
PCR Tubes |
Process:
Repeat the failed groups until imaging is successful.
1.8 Transferring the PPE and GGT plasmid into Escherichia coli
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Centrifuge tube |
E. coli competent cells |
|
Thermostat water bath |
PPE、GGT |
|
Centrifugal machine |
LB medium |
|
Temperature incubator |
Spectinomycin hydrochloride |
|
Culture dish |
Ampicillin |
Process:
1.9 Extract PPE and GGT plasmids from single colonies on agar plates and perform PCR amplification
Main experimental instrument:
|
Experiment equipment |
Experiment reagent |
|
Biohazard safety equipment |
Single colony |
|
Culture dish |
DDwater |
|
PCR Tubes |
Primer |
|
Centrifugal machine |
|
|
PCR machine |
Process:
2.0 The target fragments PPE and GGT were verified by agarose gel electrophoresis
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Balance |
Agarose |
|
Plastic mould manufacturing |
TAE Buffer Solution |
|
Electrophoresis tank and power supply |
Nucleic acid dye |
|
Ultraviolet imaging system |
Loading Buffer |
|
Metal bath |
PCR amplification product |
|
Culture tube |
LB liquid medium |
|
Biohazard safety equipment |
SmR |
|
Shaker |
Amp⁺ |
Process:
2.1 Culture Expansion and Protein Induction
To convert PK EPDH PTase and GUT1, GUT2, and TPl1 into E. coli BL21(DE3):
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Bechtop |
LB medium |
|
Balance |
SmR |
|
Centrifuge tube |
Amp+ |
|
Shaker |
IPTG |
|
Centrifugal machine |
Lysis buffer |
|
Turbine |
Nickel column |
|
Ultrasonic cell disrupto |
Separation gel |
|
Metal bath |
Spacer gel |
|
Spin Columns |
Tris-Glycine-SDS buffer |
|
Rubber sheets and combs |
Loading Buffer |
|
Electrophoresis tank and power supply |
Marker |
|
Temperature incubato |
Process:
2.2 Protein purification and identification
Process:
2.3 Convert SDS-PAGE to WB
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Film transfer device |
Transfer buffer solution |
|
Sponge, filter paper |
Lichun Red staining solution |
|
Shaker |
confining liquid |
|
Chemiluminescence imaging system |
TBST buffer solution |
|
PVDF membrane |
Chemiluminescence detection substrate |
|
primary antibodies |
|
|
second antibody |
Process:
3.1 Conjugate the PPE plasmid and the GGT plasmid together into the competent cells of Escherichia coli
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
centrifuge tube |
competent cell |
|
thermostat water bath |
LB medium |
|
constant temperature shaker |
SmR |
|
centrifugal machine |
Amp+ |
|
culture dish |
PCR reaction buffer |
|
temperature incubator |
DDwater |
|
PCR Tubes |
primer |
|
PCR machine |
agarose |
|
Agarose gel electrophoresis tank and power supply |
TAE Buffer Solution |
|
Plastic mould manufacturing |
nucleic acid dye |
|
|
Loading Buffer |
Process:
3.2 Growing curve
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Ultraviolet and visible spectrophotometer |
Culture medium of co-transformed strains |
Process:
3.3 HPLC identification of erythritol,Glycerol and Glucose
Main experimental instruments:
|
Experiment equipment |
Experiment reagent |
|
Centrifugal machine |
5 mmol/L sulfuric acid solution |
|
Filter plant |
|
|
Binary High Pressure HPLC System |
|
|
Glycerol |
|
|
Glucose |
Process: