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Best iHP


Our journey in Integrated Human Practices (iHP) began with significant challenges. In the initial stages of our project, we faced difficulties in situating our project in the industrial landscape and a lack of clarity within the team regarding the strategic role of iHP. These early setbacks created a sense of uncertainty about the direction of our human practices work.

A pivotal shift in our understanding occurred through active participation in iGEM team forums and the execution of our first stakeholder consultation. It was through these experiences that we fully grasped the power of iHP to shape and refine a project's core design and purpose.

With a renewed focus, we dedicated our limited time to the strategic integration and framing of our project. We meticulously planned a series of targeted consultations and events, aiming to create a meaningful dialogue between our scientific work and the wider world. This deliberate approach allowed us to bridge the initial gaps and authentically embed human practices into the fabric of our project.

Through establishing an intense feedback loop between our team and stakeholders from fields and expertise in metal recovery, sludge treatment and metal pollution, we were able to refine our project and create a proposed pipeline applicable to the industry.

The outcomes detailed below are a testament to this focused effort. We hope our experience serves as an encouragement to future teams; a difficult start does not preclude a successful finish. Through perseverance and a commitment to integration, meaningful iHP is always within reach.

Application development


The application development of our project spanned from ideation to finish. Thanks to the many experts and stakeholders we contacted and provided help to us, we were able to develop a refined project pipeline and future development plan in the end. With this we would like to show our process and the human practices involved, pitching the story of this journey.

Initial design

Initial design

Initial design

The initial design came from one of our teammates during ideation. At that time, our idea was to remove cadmium from sludge ash to reduce pollution and recycling it due to there being a “growing market for cadmium consumption” according to the initial research. The general steps as follows:

  1. Sludge ash is produced by incineration, which is currently done by the local sludge facility.
  2. Citric acid is added to the sludge ash to leach solid cadmium compounds out of the solution into ions.
  3. Our chassis is added to bind to cadmium.
  4. The binded chassis is filtered to be obtained, separating sludge ash and cadmium.
  5. Cadmium is separated from our chassis through elution using EDTA/ biological releasing triggers.
  6. Cadmium is obtained, sludge ash may be disposed into landfills while the chassis and citrate may be reused.

The design focused on cadmium recovery from sludge ash and suggested to have included eco-friendliness through application of biological methods, but was considerarbly challenged by our project instructors with the amount of cadmium that could be recovered and use of EDTA as an elutant.

This design was certainly not the best, but marked the start of development.

Second design

Second design 1

Second design 1

Second design 2

Second design 2

The second design amended the complicated flow of the initial diagram and included more environmental friendly elutants EDDS. The 3 key steps marked in the diagram being:

  1. Citric acid leaching of heavy metal
  2. Addition of chassis
  3. Recovery of cadmium and chassis with elutant

Project focus alteration 1

After presenting our second design, we acknowledged from internal feedback that the actual amount of cadmium we could revolver would be very low in the local context. Therefore, we agreed that it was not ideal to continue to focus on recovery. We switched our project focus from cadmium recovery to sludge remediation. Our rationale for using sludge ash being that it was how the local sewage sludge was in the form of.

However, from our consultation with Prof. Terence Wong, it was brought to our concern that this was not a good rationale if we plan to use our project to address the sewage sludge pollution problem, even more so when the local regulations of this problem are strict and sludge ash does not pose a problem worth implementing our solution to solve. To prevent targeting a problem that does not exist, we amended the focus again from providing a better method for sludge remediation to solving a problem in cadmium pollution, with recovery as an addition to benefit. In addition, we widened the scope to extend beyond the local context, providing us a better rationale for implementing the project.

To gain better insight on the application and industrial processes involved in our project, we contacted the start up BioMetallica, to which we presented our new focus of using our project to target cadmium pollution. We were suggested to include more data on cadmium pollution if we were to target it and a potential recovery method of cadmium - incineration. BioMetallica offered to assist our project development in the long term.

Third design

    Third design

    Third design

  • Removed chassis recycling step
  • Temporarily changed cadmium recovery method to incineration

After consultation with BioMetallica, we removed the process of recovering the chassis and recycling it with consideration of the cost effectiveness of the process and how surface protein expression would be hindered after the first round of processes. As a result, we could consider incineration as our recovery method and we thought it would be a better method of cadmium recovery which caused less secondary pollution compared with chemical eluting agents. Therefore we included it into our project pipeline.

As suggested by the company, we contacted Prof. Zhiguo Yuan AM in seeking validation on the advantages and feasibility of our project, who’s main criticism towards the process was that sludge ash was not a good remediation target. Sludge ash is already the product of a remediation process, namely incinerating sludge to greatly reduce its volume and removing the water to allow pollutants to maintain in a relatively stable form. In contrast, by targeting sludge, we might be able to add an additional market point to our project by including its potential to become fertilizer.

Project focus alteration 2

After the above alterations, we conducted our second meeting with BioMetallica, presenting our project focus of targeting cadmium pollution, with addition of enhancing sludge potential and heavy metal recycling. However, the main question brought up was “why only cadmium?” If our focus was to target pollution, it would certainly make more sense to have an end goal of targeting heavy metals as a whole rather than specifically cadmium. Moreover, the addition of heavy metal recycling of cadmium would not make sense. The cost effectiveness for remediating cadmium alone would not justify the process of doing so.

In response, we included remediating all heavy metals from sludge in our future cycles as a long term end goal. We decided to retain the metal recycling process because the other heavy metals recovered may have a higher market value than cadmium. This potential revenue improves the project's cost-effectiveness while furthering our primary goal of pollution removal. We also started searching for alternative methods to replace incineration as the recovery method.

In an attempt to connect with an end user facility, we were fortunately able to contact Shenzhen Shen Shui Ecological Environmental Technology CO.,LTD to gain better insight into sludge treatment. Their representatives illustrated the importance of the type of sludge we were targeting, which turned out to be a much more complicated target than we first anticipated. The key recommendation being to target industrial sludge rather than sewage sludge, as the major source of cadmium is from industrial activities, which pollutants will land in industrial sludge more.

The next time we carried out a meeting with BioMetallica, we suggested the above and was met with the concern that even though other heavy metals have more value than cadmium, the general market of metals does not have a large demand for toxic and harmful ones. It is still hard to justify the rationale for implementing this project on the end of the treatment facility. They further suggested that if our main focus is to remediate cadmium, we should focus on the removal process, urging us to define a clear goal instead of having these additions.

The problem we had to address was our definite target of addressing cadmium pollution. Through these consultations, we were constantly being challenged as to why we targeted cadmium, unable to find the key evidence to convince our industrial stakeholders as to why our project was necessary. We contacted Dr. Xiyue JIA, a co-author of a paper that heavily impacted our decision in changing the project direction to cadmium pollution in search of that evidence. To which we were validated that cadmium did in fact pose the most significant threat to soil pollution for multiple reasons, and that industrial awareness was not high due to the challenges that were pointed at us (low concentration, low cost effectiveness) .

We compared our previous research on current methods of sludge remediation, finding little data recorded on the effectiveness of cadmium removal. Those methods which cadmium was documented showed lowered efficiency towards remediated cadmium compared to other heavy metals. (Geng et al., 2020). This added to Dr. JIA’s consultation led us to believe that our project may target this gap and provide an effective remediation method that is specific to cadmium.

With this in mind, we further researched the implication methods of our project to reduce the processes needed and focused on the specific removal of cadmium rather than including additional steps for recovery.

Fourth design

Fourth design

Fourth design

Packed bed column was chosen to be the simplest and effective way of application posing an easy separation method of our chassis from the sludge

This design was chosen after throughout research on cadmium recovery methods and comparison with application methods such as direct application plus filtration. We implemented the suggestion of focusing on only our remediation method and excluded the idea of metal recovery.

In our final meeting with BioMetallica, we presented the full project goal and pipeline to them, which we received positive feedback towards. The only suggestions left were for the diagram to be more specific, thus leading to our final pipeline design.

Fifth Design

Fifth design

Fifth design

Evaluation of our solution

As part of iHP feedback stakeholders, they implored us to adopt a more entrepreneurial and application-based approach to the project. Thus, we extrapolated our data to existing data and literature in order to demonstrate the current feasibility of the project.

Firstly, we have analysed the data of our ICP-OES analysis and converted the values for real-world comparison. In the figure below, the first two bars plot the decrease caused by ECMT and EC but converted into mg and scaled up. In the following third bar plot coloured red, it subsequently shows the difference between the two groups. In other words, it represents the estimated decrease in cadmium caused by MT activity. Based on this, it is expected that 1 litre of ECMT sample expressing the metallothionein at a density of OD = 1 can remove an estimated 70 mg of Cadmium.

Approximation of cadmium removal efficiency of PflQ2MT

Approximation of cadmium removal efficiency of PflQ2MT

To calculate this value, we assumed that OD and subsequent protein expression can be linearly scaled up to OD = 1. This is supported by the data found in Week 10 of our Notebook page, which shows that the bacteria grow in a relatively linear relationship between OD 0.5 and OD 1.0. As mentioned in our Experiments page, we subcultured our bacteria to around 0.6 before inducing with IPTG. Thus, we believe this is a reasonable assumption to make when scaling up the density of our samples.

As mentioned prior, we subsequently calculated the difference between ECMT and EC groups to account for any potential reduction of cadmium caused by dilution or native mechanism within unengineered E. coli. Comparing previous literature suggesting that sludge has a concentration of around 4 mg of cadmium/L of sludge, we therefore estimate that 1 L of our bacteria at OD = 1 can approximately treat 18 L of sludge at its current rate of expression. While time restrictions prevented us from testing the MT function in P. putida, the western blot confirming its expression in the chassis, similar to E. coli, provides grounds to suggest that it would possess the same functionality. Further characterisation of the protein and its expression could be done to further optimise the amount of cadmium removal that could be achieved.

Regrettably, past stakeholders were unable to provide estimated values for our cost-approximation and characterization of our project would require the preestablishment of a specific sludge source. As described in our Description Page, we aim to replace the non-specific precipitation of heavy metal ions with our bacterial solution. Through this, we present an advantage over traditional methods as we prevent the need for chemical precipitation. These methods have been cited to potentially cause secondary pollution, or alkaline residues which are damaging to the environment, especially if executed at an industrial scale (Gomes et al., 2016; Zhang et al., 2024). Therefore, while we understand the actual efficiency of our solution is still ambiguous and at its current stage is likely to be not as cost-effective, our solution is still able to be effective at cadmium removal while having added advantages of being specific and more sustainable which can justify its implementation in real-world situations.

Therefore, we believe our solution proposes promising advantages and shows potential for cadmium-specific remediation at a larger scale.

Outreach


Who we met: Dr. Weon Bae

Dr. Weon Bae is the researcher of Union Biometrica, a company focusing on bioimaging and instrumentation. He is the leading writer of papers introducing and analyzing EC20.

Why: To learn more about EC20 and explore how to express it in P. putida

What we learned:

Diverse characteristics of EC20

  • Difference with EC20 and Metallothionein
  • Binding affinity
  • Nanocrystalline
  • Competitiveness of Heavy Metal to EC20
  • Length and ratio of EC20
  • Synthesizing EC20

Advantage of choosing Metallothionein over EC20

  • More stability in our chassis
  • Specificity to cadmium

What we adopted to our project:

  • We decided to use Metallothionein as the binding protein used in our circuit
  • For alternative applications we also decided to conduct the experiment of synthesizing EC20

Find out more!

Who we met: Professor Terence WONG

Prof. Wong is a faculty member of HKUST while also being the Associate Director of the HKUST Research Center for Medical Imaging and Analysis (CMIA). He is the founder of two biomedical engineering startups, PhoMedics.

Why: To get the insight of an entrepreneur and gain feedback about our problem definition and scope.

What we learned:

  • How the future of the project should be set
  • The current problem of sludge pollution/ remediation importance is not that convincing to be defined as the main target of our project.

What we adopted to our project:

  • Modifying of main target from focusing on sludge remediation to cadmium remediation

Find out more!

Who we met: CEO Ing. Dr. Kwadwo "Joe" A A + technicians of BioMetallica

BioMetallica is a startup situated in Hong Kong and Singapore. Their company aims to use biological agents to extract precious metals from conventional sources and recover them from waste streams.

https://www.biometallica.com/

Why: The purpose of these meetings was to gain expert insight from a real-world market perspective, ensuring our iGEM project not only demonstrated technical feasibility but also addressed genuine industry needs and market demand.

Offline meeting with BioMetallica CEO Joe

Offline meeting with BioMetallica CEO Joe

Note: Biometallica provided ongoing support to our project over three months (July–September), participating in a total of 4 structured meetings. Their sustained involvement created a valuable feedback loop, and their advice directly shaped core aspects of our project direction, technical focus, and presentation to stakeholders.

What we learned:

The viewpoint of the market on our project

Marketability:

We learned that for a biological solution to be marketable, it needs to be scalable for real waste streams and competitive with established chemical and physical remediation methods. End-users (industry, government, waste managers) are most interested in solutions that offer clear differentiation and purpose (lower toxicity, easier separation, circular economy potential).

Purpose:

The project purpose was clarified—transitioning from sludge remediation and recycling of heavy metals to the focus of cadmium remediation and sludge enhancement.

Pipeline:

With their feedback, we developed a proposed technical and commercial workflow, from metal-laden sludge intake to final reuse or safe storage, explicitly considering downstream logistics.

What are the stress points when marketing our project and finding stakeholders

What we adopted to our project:

Inspired design of project implementation pipeline:

Guided by Biometallica, we established a well-defined pipeline encompassing biosorption and separation. We reframed our project to emphasize market impact—positioning the technology as a necessary and effective means to cadmium remediation.

Click to open details of each meeting and subsequent development

.

Click to open details of each meeting and subsequent development

Who we met: Professor Zhiguo YUAN AM

Prof YUAN AM's research focuses on development of innovative solutions for urban water management and environmental biotechnology through effective integration of fundamental science and applied engineering.

Why: To get feedback and advice on project application pipeline and logic of the project

What we learned:

Feedback on diverse fields of the project

  • Competitiveness
  • Compatibility
  • Application

Suggestion on presentation method of dry lab models

What we adopted to our project:

  • Shifting the focus from sludge ash to sludge
  • Conducting market research
  • Renewing the pipeline model

Find out More!

Who we met: Professor Xiaoqiang JIA

Professor Xiaoqiang JIA is an associate professor of TianJin university.

Why: To get feedback about our biosensor design and ask for improvement

Online meeting with Professor Jia

Meeting with Professor Xiaoqiang Jia

What we learned:

Parameter required to identify

  • The relationship of accumulation
  • The relationship of degradation

Possible Challenges

  • Complexity
  • Processing time
  • Necessity of the biosensor

What we adopted to our project:

  • Repurposing of biosensor

Find out More!

Who we contacted: Dr. Wing Ping YIP, HKUST Health, Safety, and Environment Office

Why: To get suggestion and help for safe disposal of heavy metal (cadmium) in laboratory

What we learned:

  • Proposed safe disposal method for cadmium solution

What we adopted to our project:

  • Implementing a special disposal bin only for cadmium-containing solutions
  • Creating our own protocol for safe disposal of cadmium-containing solution

Find out More!

Who we met: Representatives from Shenzhen Shen Shui Ecological Environmental Technology CO.,LTD, Mr. Bo XIE and Mr. Yunhua KONG

Shenzhen Shen Shui Ecological Environmental Technology CO.,LTD is a company specializing in eco-friendly waste treatment. Their services covers a wide variety ranging from waste water and sludge treatment to recycling of building materials.

Why: An attempt to reach out to a potential end user and to try and understand the viewpoint of a sludge treatment facility on implementing our project

What we learned:

  • The sludge type we are targeting was vague and our original idea of sewage sludge was not convincing
  • Some methods and insight on finding relevant data we wanted

What we adopted to our project:

  • changed target sludge to industrial sludge

Find out More!

Who we met: Dr. Xiyue JIA

Dr. Jia is a researcher from Tsing Wa University who is the co-author of the paper "Global Soil Pollution by Toxic Metals Threatens Agriculture and Human Health" (2025), a paper which analyses the global land heavy metal pollution problem. Her research interests lies in this field as well, expertising in toxic metal impact in soil.

Why: To get insight about the seriousness of the cadmium pollution

What we learned:

  • Severity of Cadmium pollution in current and future
  • Feedback on our project
  • Potential application
  • Possible directions
  • Challenge

What we adopted to our project:

  • Using insight gained from Dr. Jia, we disputed the confusion of whether cadmium pollution was a serious problem.
  • Better framing of why the problem needs solving

Find out More!

Characteristic of EC20


June 2025

During the initial design phase of our main genetic circuit, we considered two candidate proteins for cadmium binding: EC20 and metallothionein. However, the scarcity of published literature on EC20 presented a significant challenge to our design process. To gain deeper insight into its characteristics and functionality, we proactively contacted Dr. Weon Bae, a leading researcher in biomimetics and an author of key publications on EC20.

Consultation at HKUST InnoLab

Fortunately, Dr. Bae was stationed in Hong Kong, enabling an in-person consultation at HKUST. We presented our project design and discussed questions on EC20 and its synthesizability. Dr. Bae clarified EC20’s distinct characteristics and key differences from metallothionein (naturally occurring protein vs. artificially created peptide), explained competitive binding among cadmium, zinc, and mercury, and advised that synthesizing EC20 might be possible but would require deeper research and trials.

While EC20 and metallothionein differ structurally, our context of bacterial expression and metal binding indicated metallothionein offers superior specificity for cadmium and compatibility with the chosen chassis. Dr. Bae also noted prior EC20 extensions aimed to mimic metallothionein, and EC20 synthesizability remained uncertain. To reduce risk, we chose metallothionein as the primary route while keeping EC20 synthesis trials as academically valuable parallels.

This consultation was pivotal: it confirmed the surface-expression protein choice and motivated parallel EC20 experiments. By comparing both approaches, the project can assess efficacy across options and strengthen overall outcomes.

Our team with Dr. Bae

Our team with Dr. Bae

End user and Problem definition


July 2025

As research into sludge and cadmium remediation advanced, a key decision emerged: whether to focus specifically on cadmium or broaden to multiple heavy metals.

To inform this choice, the team consulted Professor Terence Wong (Department of Chemical and Biological Engineering, HKUST), founder of the bioimaging company PhoMedics, to obtain an entrepreneurial perspective on scoping and end-user alignment.

Consultation insights

Professor Wong recommended concentrating on a single, well-defined application for the first implementation and expanding only after validation.

He emphasized proactive outreach to potential end-users, noting that even rejections provide critical information about stakeholder needs and market realities.

Outcome and adoption

Based on this guidance, the project scope was narrowed to focus on cadmium remediation to build a robust, validated proof-of-concept.

Remediation of a broader spectrum of heavy metals was positioned as a longer-term objective for future scaling after initial success.

Prof. Wong and team members

Prof. Wong and our members

Collaboration with BioMetallica: Market-Focused Project Development


Initial meeting

Our initial goal for contacting BioMetallica was to obtain some insight on the industry's viewpoint of our project and how to apply it. Prior to our first meeting, we had just amended our project scope to focus on cadmium rather than sludge. As a result, this meeting also served as an opportunity for us to see the potential insufficiencies in our storyline.

Third design

Discussion with BioMetallica representative

What was brought up to us could be categorized into the following:

Problem framing:

  • We lacked efficient characterization on the seriousness of cadmium pollution in our presentation.
  • It did not make sense to target only cadmium when other heavy metals also posed a pollution issue.

Application:

  • Agreed that recycling heavy metals collected could potentially support cost efficiency for our project, but we would need to confirm the demand of cadmium. Therefore it is better to find an institute that would accept cadmium.
  • Illustrated the importance of a specific end user and how it would benefit the project design by establishing clear needs and expectations.

Our meeting ended with an offer to assist us in development throughout the rest of the project timeframe, which we are tremendously grateful of. Thus the following meetings were able to be conducted in succession, greatly assisting our pipeline and project positioning.

Subsequent development
  • Conducting profound background and market research on cadmium and heavy metal pollution to strengthen the need for a solution to cadmium pollution. In addition, considering the possibility and changes required if we changed to targeting heavy metal pollution as a whole.
  • Attempted once more to reach out towards the local sludge facility and heavy metal pollution control institutes in hope of establishing a defined end-user.
  • Temporarily decided to include burning as the method to recover cadmium from our chassis.

Second meeting

After our background research on cadmium, we found data supporting that cadmium pollution was the most severe amongst all heavy metals, therefore we continued to target cadmium and presented this development in the second meeting. Unfortunately we were unable to receive a positive response from our accessible potential end users before this meeting. The meeting highlights as below:

Concern of heavy metals:

  • We were challenged with the fact that although cadmium is the most severe problem, we still were not answering the question "why not all heavy metals?" If our goal is to remediate pollution, targeting more and having a wider application is always more appealing than something that has a very niche application.
  • With reference to the scope of iGEM, they suggested that it may be beneficial to say that we use cadmium as an example while considering the application of our project to at least 3 types of heavy metal, therefore framing it as targeting all heavy metals being the ultimate goal.

Evaluation of project:

  • There are many aspects in considering an industrial process. To better establish the advantages of our project and how it stands out, suggestions were that we should pick out a few key points of our project and compare them to current methods instead of doing a broad comparison.
  • A clear pipeline should be made to illustrate the project instead of describing it. We underestimated the importance of the pipeline application in our project.
Subsequent development
  • At that time we decided to take the suggestion of remediating all heavy metals as our ultimate goal, subsequently we conducted some background research on the environmental impacts of 2 other toxic heavy metals, lead and arsenic as well as the potential to recycle them.
  • Created pipeline models and included them in subsequent human practices to receive better feedback on the application of the project including Shenzhen Shen Shui Ecological Environmental Technology CO..LTD, which was conducted after the third meeting.

Third meeting

In this meeting, we proposed the project advantage of being able to specifically recycle heavy metals from the sludge by modifying the sequence of Metallothioneins in the future project, while specifying the following pipeline:

Once we tried to include details in the pipeline, many issues immediately arose:

Method:

  • Burning is not the best removal process and would not align with our goal of remediation and minimizing environmental impact.
  • Metal recovery and disposal both have risks that need to be accessed, choosing the method requires much more consideration.

Cost efficiency:

  • The market value for toxic heavy metals especially cadmium is very low, if we aim for metal recovery, we must be very clear on what can be recovered and can the recovery compensate for the cost of the process.

Future directions:

  • With reference to the remaining timeframe, it was clear that no major experimental modification could be done at that point to maintain the integrity of the project. Thus, a clear future plan should be made to compensate for what the timeframe could not allow us to achieve.
  • Suggestions regarding short term to long term implementation and development of the project were given.
Third design
Subsequent development
  • Removed incineration from the pipeline and explored other methods of metal recovery. Our final decision being to focus on remediation of cadmium rather than recycling heavy metals.
  • Rephrased the advantage of specificity of our project to be that it is necessary to use specific remediation methods to remediate cadmium.
  • Designed future cycles of the project.

Final meeting

During the final meeting, we presented our near-final pipeline model and sought any last insufficiencies in the project framing and application, which was presented as the following:

Third design

Regarding the framing, the story appeared to be clear and much more convincing than the beginning, which became the current project description as stated in that page. However, the pipeline was still not that clear. The final suggestion we received was to include how the bacteria binds to the column, and illustrate clearly on the diagram how our chassis will bind to cadmium in the column.

The long journey of development ended with their best wishes and encouragement along with our ever gratefulness to their help.

Subsequent development
  • Resolved issues proposed, researched blind spots of how bacteria would bind to the column.

Flow and practicality of the project


August 2025

As we progressed in developing our project's workflow, we identified a significant gap in our knowledge regarding real-world sludge treatment processes. This lack of practical insight presented an obstacle to designing an effective environment and protocol for our genetically engineered chassis to perform optimally. To bridge this gap and gain a holistic, industry-relevant perspective, we sought the expertise of Professor Zhiguo YUAN AM of the City University of Hong Kong, a renowned expert in wastewater treatment and resource recovery.

We were fortunate to engage in an online consultation with Professor Yuan. After providing a concise overview of our project, he generously provided critical feedback, offering valuable suggestions and raising important practical considerations that were essential for grounding our experimental design in real-world application.

Online consultation with Prof. Yuan

Online consultation with Prof. Yuan

Key feedback domains

Professor Yuan structured his feedback around three critical domains: competitiveness, compatibility, and application.

Competitiveness

Regarding competitiveness, he contextualized our project within the existing landscape of sludge treatment, citing advanced methods such as green energy-driven electrochemical cells. He emphasized that for any new technology to be adopted, it should demonstrate clear advantages in target fields such as cost-effectiveness, processing efficiency, and operational safety compared to incumbent solutions.

Application

On the subject of application, Professor Yuan provided crucial guidance by advising us to target raw sludge directly, rather than sludge ash. He explained that raw sludge retains its organic matter; successful extraction of heavy metals would therefore allow the resulting byproduct to be repurposed as a valuable fertilizer. This approach would significantly enhance the project's value proposition by transforming a waste product into a useful resource, aligning with circular economy principles.

Compatibility

Finally, he raised essential points concerning compatibility. He questioned whether the environmental conditions optimal for our chassis's survival would also be suitable for mobilizing cadmium, particularly regarding pH levels. We tested the survivability of our chassis in the environment of sludge afterwards and proved that it is optimal. Model and experiment results are available.

The pipeline presented

Third design

The pipeline presented

Integrating this expert advice, we undertook several strategic actions. We initiated a methodical analysis of the sludge treatment market to quantitatively compare our solution against traditional methods across the dimensions of cost, efficiency, time, and safety. Furthermore, we comprehensively revised our project pipeline to incorporate more detailed and logically robust protocols. For example, we changed from sludge ash to sludge, and detailed our process including filtering the chassis and remaining sludge.

Finally, we began actively exploring end-product applications, such as fertilizer use and metal recovery, as a core component of our project's value and impact, which will later be confirmed and finalized after other consultations with respective experts.

Next steps from the consultation

At the end of the meeting, Professor Yuan expressed concern regarding the seriousness of cadmium pollution in the world today. To address this, he recommended that we consult an expert in the field to assess its true environmental impact. Therefore, acting on his suggestion, we decided to try and contact some of the writers of our research literature to characterize and better frame the problem of cadmium pollution.

We gratefully acknowledge Professor Zhiguo Yuan for his invaluable expertise in wastewater treatment, which provided critical guidance for the practical application and environmental compatibility of our project.

Feedback and Inspiration on Biosensor Design


August 2025

Biosensor circuit is one of our key circuits. While we designed our circuit, we referred to the genuine paper, "Improvement of a highly sensitive and specific whole-cell biosensor by adding a positive feedback amplifier." Deeply inspired by this design, we made our own biosensor system referencing his design. We decided to contact the writer of this paper, Professor Xiaoqiang JIA, for his opinion and insight on our biosensor. Fortunately, Professor Xiaoqiang JIA spared his time for the online meeting. We discussed our biosensor design, and he gave us valuable insights.

Our team meeting with Professor Jia

One thing that he reminded us was the parameter required to identify for testing the biosensor. He suggested we identify the relationship of accumulation of fluorescent protein and the relationship of degradation. In addition, he mentioned that the degradation would impossibly be a linear change since the variables are hard to modify but will have some effect. His idea was taking samples at different times. However, this leads to challenges we might face.

Real-time vs. sampling trade-offs

The most attractive part of our design was real-time detection. However, he raised the question that "why is our biosensor better than taking samples?" Since the binding of cadmium to metalloprotein will take a certain processing time, if the processing time is too long, our biosensor does not have to be very fast and accurate. It might be better to take samples out in a certain time frame to analyze the concentration of cadmium in the sample.

Still, Professor Jia generally commented that our project is very innovative, but facing some potential challenges in the practical world. This valuable meeting revealed the gap between academic research and real-world applicability. We recognized the importance of considering practical applications early in the design process to bridge this divide.

Online meeting with Professor Jia

Our team meeting with Professor Jia

Ensuring Safe Lab Environment


June 2025

Upon defining our project's goal of cadmium remediation in sludge, our team immediately recognized the critical need for a safe disposal method for the extracted cadmium. Given that our lab members had no prior experience handling heavy metals, our first step was to consult the experts at the HKUST Health, Safety, and Environment Office (HSEO) for guidance.

We provided HSEO with a comprehensive outline of our experimental protocol, detailing the chemical solutions involved and a thorough risk assessment identifying potential hazards. In a formal consultation with Dr. Wing Ping Yip of HSEO, we discussed appropriate decontamination and disposal techniques. The office provided a sanctioned procedure: all cadmium-containing waste streams must first be separated. Subsequently, biological material must be inactivated through autoclaving or chemical sterilization to eliminate microbial organisms. Finally, the treated waste is to be collected in a dedicated "Metal Waste" container supplied by HSEO for specialized disposal.

Upon receiving and integrating these official safety protocols into our operational framework, the team proceeded with the finalization of the experimental design and the procurement of necessary materials, ensuring full compliance with institutional and environmental safety standards.

Consultation with HKUST HSEO

A chemical waste container provided by HSEO after we emailed them for sludge/cadmium contaminated materials disposal

Viewpoint of Sludge Treatment


August 2025

Through a news article introducing their new sludge dewatering technology, we found the Shenzhen Enterprise's "Cutting-Edge Tech" Unlocks Sludge's "Transformation Journey": From "Waste" to "Resource Treasure Trove" | Visiting Futian's "Little Giants" and contacted their representatives as we were trying to find an end user as suggested by Biometallica. To our appreciation, Mr. Bo XIE replied to us promptly and an online meeting was scheduled.

Consultation with representatives

Consultation with representatives

During the meeting, we first introduced to them our project and circuit. The main criticism brought to us was that sewage sludge should not be our target. When we explained to the representatives we would like to apply our project to sewage sludge, they commented that there was minimal cadmium in sewage sludge due to its source being mainly industrial activities. In addition, they explained that “sludge” was merely a general term and that sludge contents were highly specialized and it would benefit us to be more specific in what sludge to target instead of just targeting sludge as a whole. They further illustrated how each treatment process should be localized as sludge components and water concentrations differ drastically and depend highly on the area.

In response, we first narrowed down our target sludge to industrial sludge, preferably sludge from mining facilities since that was the main source of cadmium pollution. The representative’s comments pose a challenge to find specific data towards the sludge we wanted to use since Hong Kong did not have any industrial sludge industries and the pipeline of industrial sludge treatment in further places included layers of complexity and confidentiality. In the end we managed to find a paper on the specific sludge concentrations and used that as a baseline for further experiments and modelling.

In addition to the above, we also sought guidance on whether there were any standards on accessing the efficiency of treatment processes. The response we obtained was that there was no standard practice and again, highly depended on the specific sludge we were using, which further highlights the importance of that data. Therefore, one of our main goals of the future cycles of the project is to find a specific facility that may be interested in implementing our system, such that we may be able to obtain such data which is normally confidential to the public according to the representatives.

Seriousness of Cadmium Pollution


September 2025

Following our consultation with Professor Yuan, we conducted a subsequent literature review to deepen our understanding of global cadmium pollution. During this research, we identified a highly relevant publication detailing the significant cadmium contamination in major rice-exporting nations and its severe implications. To gain further insight into this critical issue, we contacted Dr. Xiyue JIA, a co-author of the article, and were fortunate to secure an online meeting with her to discuss her findings.

Online consultation with Dr. Jia

Online consultation with Dr. Jia and her colleague

Dr. Jia generously shared a wealth of valuable expertise during our consultation. We engaged in a detailed discussion covering the global severity of cadmium pollution, its projected trajectory, the potential efficacy of sludge treatment and cadmium extraction as a solution, and her professional assessment of our project's approach.

She confirmed that cadmium contamination represents a critical environmental challenge, particularly in the context of soil pollution. Dr. Jia elucidated that cadmium ranked as the most serious pollutant in Mainland China's national soil survey. Furthermore, she explained its bioavailability, noting that cadmium accumulates rapidly and easily in staple crops such as rice, creating a direct pathway to human exposure. She anticipates that cadmium pollution will persist, citing the ongoing use of cadmium-containing phosphate fertilizers in developing nations and regions with less stringent environmental regulations. This trend is exacerbated, she noted, by the relocation of industrial operations to these same regions. Jia also added that due to the low detected concentration of cadmium, the risk of cadmium pollution is often dismissed or neglected by remediation industries, leading to low awareness of the problem of cadmium pollution.

Application, competitiveness, and challenges

Regarding feedback, Dr. Jia structured her insights into three key areas: potential application, competitiveness, and challenges.

Potential Application: She advised expanding our project's scope to consider direct soil application. Given that biological solutions often entail lower operational costs, she highlighted the potential for our technology to offer a sustainable and economically viable remediation strategy for low-income countries.

Competitiveness: Dr. Jia provided an overview of existing soil remediation technologies, such as biochar, hyperaccumulators, and phytoremediation. While noting biochar's simplicity and environmental friendliness, she pointed out its fundamental limitation: the inability to remove heavy metals from the soil. Consequently, she suggested we investigate alternative mechanisms, such as bioprecipitation or redox reactions, to reduce metal toxicity and mobility, thereby differentiating our solution.

Challenges: A significant concern she raised pertained to end-disposal and recycling. She emphasized the need for a robust plan for the final fate of the captured metals and the treated biomass. Noting the complexity and resource intensity of chemical treatments, Dr. Jia proposed that a truly sustainable solution would involve preserving the organic matter in sludge for use as fertilizer while simultaneously recovering metals without adversely altering soil pH.

The consultation with Dr. Jia cleared off some confusion given by other stakeholders regarding the problem of cadmium pollution and provided us with evidence when suggesting the importance of our project. Her opinion also played a part when we were deciding whether the fate of the cadmium of our project should be disposal or recycling.

We gratefully acknowledge Dr. Xiyue Jia for her invaluable expertise, which provided critical perspective on the global scope of cadmium pollution and essential guidance for evaluating our project's practical applications and challenges.

Collaborations


Time: 2025/07/14 - 2025/07/16

Organising Units:

  • HKU-HongKong iGEM Team
  • SUSTech-BIO iGEM Team
  • HKUST iGEM Team
  • HKUST-GZ iGEM Team
  • iGBA committee

Overview:

We are honoured to once again serve as a cohost for the 3rd iGEM Greater Bay Area Forum. This year, a 3-day forum from 14-16 July was successfully held at Hong Kong University and Southern University of Science and Technology. We thank them greatly for providing us with the venue to share our project with other teams and consult with experts in iGEM. We visited multiple leading companies on synthetic biology in Shenzhen and witnessed cutting edge technology that would change the future of lab processes. Overall it was a wonderful experience to mingle with fellow iGEMers and insightful to our project.

Purpose of the event

To provide iGEM teams in the Greater Bay Area a forum to mingle and connect, inviting experts and companies to create an environment made to facilitate connections and inspiration.

Find out more!

Time: 2025/08/06 - 2025/08/08

Organising Units:

  • Shenzhen Synthetic Biology Association
  • Ailurus Biotechnology Shenzhen
  • Beijing Zhongguancun Science City Innovation Development Co., Ltd.
  • Beijing Z-Innoway Technology Services Co., Ltd.
  • PekingHSC iGEM Team
  • Tsinghua-M iGEM Team

Overview:

The 12th Conference of China iGEMer Community (CCiC) & Synbiopunk 2025, held from August 6th to 8th at the Zhongguancun Exhibition Center in Beijing, represents significant advancement in China's synthetic biology. This year marks the first-time integration of the CCiC with the innovative Synbiopunk Global Bio-Developer Conference. This fusion creates a unique, three-day platform that connects student innovation with industry and academic frontiers.

Objectives:

To cultivate and inspire the Chinese iGEM community by providing a platform for students to present their research progress and receive feedback

To create an environment where students, leading academics, industry experts, and investors can network and share insights, thereby strengthening the entire synthetic biology community in China and beyond.

Find out more!

The 3rd iGEM Greater Bay Area (iGBA) Forum


Preparation

On 27th April, the cohosts for iGBA gathered at HKUST to exchange ideas and plan for the forum. We prepared a campus tour for other iGEMers that day and shared our projects with each other. A meeting was conducted afterwards to plan for the forum.

After a month of preparation, a second meeting was held on 31st May at SUST to finalize the rundown and logistics of the forum. We toured the venue for Day 3 of the forum and shared progress on our projects as well.

Day 1

We arrived at HKU rather early to help set up for the events. A mock jamboree was hosted by them for both undergraduate teams and high school teams to have a taste of the real thing. At the opening ceremony, we were honoured to have Professor King Lau Chow, iGEM judge and our PI to kick start the forum with a speech. He acknowledged the teams that participated and reminded us the point of doing an iGEM project is not about chasing medals, but to solve the problems that we see and enjoy the experience.

In the afternoon, our team took part in the workshops organized by our host designed to be fun and insightful. We competed against other teams in a lab technique competition, enriched ourselves with the knowledge of biosafety and sustainability goals during the iHP workshop, and were reminded of the importance of storytelling in the wiki workshop. While some of our members joined these activities, the rest mingled with the other teams and companies at the booth placing venue.

Day 2

This day was all for site visits. We arrived at Shenzhen for the rest of the forum, and gathered at SUST after a night’s rest for what's to come. Coaches took us to Salus BioMed, where they gave us a tour of their lab. In the afternoon, we had a tour of the Shenzhen Synthetic Biology Infrastructure where they showcased how robotics can be used to drastically increase the efficiency and accuracy of lab work. We experienced the current development of biotechnology and the possible future of synthetic biology.

Day 3

At SUST, companies and teams set up booths together. iGBA provided us the valuable opportunity to directly communicate with biotech companies for equipment and reagents. In the morning, a round table meeting between biotechnology experts and iGEM representatives was held with the participating iGEM teams, a fruitful discussion about the interdisciplinary nature of iGEM and the future developmental direction of iGEM commenced. The meeting was a great chance for experts and participants to exchange their thoughts on iGEM and look at the different points of views.

We had a chat with Prof. Bao Yu Han during a break about the iHP of our project. We were hesitant about the project development as it posed multiple challenges at that time, he brightened our spirit despite the challenges we faced during the development of storyline and iHP. “It is never too late for iHP.” His words encouraged us to try even harder to reach out and eventually lead to some success.

Collaborating companies were kind enough to prepare talks regarding biosafety for us. While outside the lecture hall were enthusiastic discussions, inside were intent listeners.

Gain

Our iGBA experience led us to walk away with insights on human practices and valuable connections between teams, which encouraged us and facilitated events and development afterwards. Overall it was a fun and fruitful experience.

IGBA3
IGBA2
IGBA1
IGBA4

The 12th Conference of China iGEMer Community (CCiC) & Synbiopunk 2025


Day 1 Summary (Aug 6)

The first day of CCiC commenced with the official Opening Ceremony, featuring addresses from distinguished guests. This was followed by two pivotal talks: a Keynote by Guo Haotian, CEO of Ailurus Bio, on "Programming Reality by Programming Biology," and a Spotlight lecture by Feng Chao from Danaher Life Sciences on high-throughput automation in synthetic biology. Concurrently, it marks the commencement of iGem Team Project Presentations, and our team took the stage during the Bioremediation session. We had the opportunity to have a 5-minute presentation on our progress to a diverse audience of peers, judges, and industry experts. Beyond the presentation hall, one of the day's highlights was the opportunity to connect and bond with the HKUST-GZ iGEM team. During the breaks and informal networking sessions, we discussed our respective projects and shared our experiences in the early stages of iGEM preparation.

Day 2 Summary (Aug 7)

The morning of the second day of CCiC was packed with critical Panel Discussions. Key topics included "The Next Leap in DNA Synthesis," featuring leaders from Twist Bioscience, Licheng Bio, and other key players, and "Rewriting Perception: Aesthetic Mutations in the Age of Life Technologies," which brought together artists and scholars. Meanwhile, student project presentations continued, showcasing work across Therapeutics, Climate Crisis, and other villages. The afternoon continued with a highly anticipated Fireside Chat with Prof. Ariel B. Lindner, a core session on Generative AI and Life Sciences. During this time, we had the opportunity to display our project poster. This allowed for more detailed and personal interactions than the rapid-fire stage presentations. Our poster attracted a steady stream of attendees, including students from other iGEM teams and academic researchers. The feedback we received was immensely valuable and documented below.

Day 3 Summary (Aug 8)

The third and final day brought the event to a close. It featured a Spotlight Talk by Wang Yi, Marketing Director of Daxiang Technology, on "Synthetic Biology and Organoids: From Genetic Design to Life Simulation," which explored the engineering strategies and challenges of building life at a tissue scale. This was complemented by academic keynote addresses from leading researchers, including Associate Professor Zhang Shuyi from Tsinghua University on "Intelligent Design and Application of Biological Systems," covering AI-assisted design and reactor optimization, and Researcher Zhang Shouyue from the Chinese Academy of Sciences on "Mining New Microbial Systems Based on Protein Structure Evolution."

Feedback

Throughout the three days, our team received invaluable feedback from peers, judges, and experts during our presentations and poster sessions. The feedback can be summarised:

Regarding our computational models for generating new proteins, we were advised to use existing architectures (like RFdiffusion) first and then modify them, rather than attempting to build a model from the ground up, starting from scratch would be exceptionally difficult and time-consuming.

A recurring and critical question was about our project's ultimate solution for the extracted cadmium: "The bacteria binds the cadmium, but then how do you deal with the bacteria?” This problem was later solved through a long series of comparisons of pipelines and research.

The purpose and advantage of our integrated biosensor were questioned. Experts asked, "Why don't we just take time-integrated sludge samples and use more efficient lab methods to test for cadmium?" This led to our consultation with experts regarding the biosensor and rethinking the purpose of it and how it would contribute to the pipeline of our project.

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Our team present at CCiC in Zhongguancun, Beijing, China

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Presenting in the conference hall of CCiC

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Other teams visiting our poster display at CCiC

References


    • Geng, H., Xu, Y., Zheng, L., Gong, H., Dai, L., & Dai, X. (2020). An overview of removing heavy metals from sewage sludge: Achievements and perspectives. Environmental Pollution, 266, 115375. https://doi.org/10.1016/j.envpol.2020.115375
    • Gomes, H. I., Mayes, W. M., Rogerson, M., Stewart, D. I., & Burke, I. T. (2016). Alkaline residues and the environment: a review of impacts, management practices and opportunities. Journal of Cleaner Production, 112(4), 3571–3582. https://doi.org/10.1016/j.jclepro.2015.09.111
    • Hu, S., Zhang, G., & Jia, X. (2023). Improvement of a highly sensitive and specific whole-cell biosensor by adding a positive feedback amplifier. Synthetic and Systems Biotechnology, 8, 292–299. https://doi.org/10.1016/j.synbio.2023.03.007
    • Tandy, S.; Ammann, A.; Schulin, R.; Nowack, B. (2006). "Biodegredation and speciation of residual SS-ethylenediaminedisuccinic acid (EDDS) in soil solution left after soil washing". Environmental Pollution. 142 (2): 191–199. https://doi.org/10.1016%2Fj.envpol.2005.10.013
    • Zhang, Y., Shen, Z., Zhou, W., Liu, C., Li, Y., Ding, B., Zhang, P., Zhang, X., & Zhang, Z. (2024). Environmental problems of emerging toxic metals and treatment technology and methods. RSC Advances, 14(50), 37299–37310. https://doi.org/10.1039/d4ra06085g
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