Index >> Credits and Licenses
Elements used in wiki mainframe
| NAME | TYPE | LICENSE | DETAILS |
|---|---|---|---|
| Inter | font family | SIL OFL 1.1 License | used as the major font face/ font family |
| firacode | font family | SIL OFL 1.1 License | used as the font face for code fonts |
| jquery ripples | MIT License | jQuery Ripples plugin | |
| jquery | MIT License |
Dry lab Software / Tools
| Name | Purpose |
|---|---|
| AutoDock4 | Molecular Docking |
| Avogadro | Ligand generation and preparation |
| AlphaFold 3 Server | Protein 3d Structure generation |
| RCSB PDB, MolView | Protein and Ligand 3D structure repository |
| PyMol, Discovery Studios | Visualization |
| YASARA | MD Simulation |
Wet lab Software / Tools
Molecular tools
| Software/ Tools | Purpose |
|---|---|
| Microcentrifuge | Pellet and collect DNA/protein samples |
| Thermal Cycler (PCR) | Amplify DNA inserts |
| Gel Electrophoresis Unit | DNA/protein separation |
| UV Transilluminator | Visualize DNA bands |
| Nanodrop Spectrophotometer | DNA/protein quantification |
| Incubator Shaker | Culture growth under IPTG induction |
| SDS PAGE setup | Protein expression check |
| Ni-NTA Column | Affinity purification |
| ICP MS instrument | Metal Quantification |
Software/ Bioinformatics Tools
| Software/ Tools | Purpose |
|---|---|
| Snapgene/ Benchling | Vector design, Cloning Simulation |
| NEB Cutter/ Addgene Tools | Restriction enzyme site mapping |
| NCBI BLAST | Sequence verification |
| PyMOL | 3D Visualisation of Proteins |
| ImageJ | Quantify Gel Band Intensities |
| Graph Pad Prism/ Excel | Plot Kinetics, adsorption curves |
| ICP MS Software | Data acquisition and calibration |
Others
- Research & scientific resources
- igem foundation elements
- research articles and journals as cited - news and other articles as cited
- Geospatial / GIS & mapping
- arcgis preload
- field move clino - android app for field mapping
- google earth
- google maps
- google earth studio
- google earth engine
- Design, media & assets
- canva - including free to use elements
- pixabey - used and given attributions
- fonts provided in the softwares and services used
- free unicode and ascii character elements from the used softwares
- Office & productivity
- google workspace - google doc google sheets google drive
- ms word ms excel
- Web browsers
- google chrome
- safari
- Development & editors
- vs code
- vs code insiders
- xampp
- Version control & hosting
- git
- github desktop app - both windows and mac
- gitlab
- github services
- AI models & conversational assistants
- google gemini
- grok
- chatgpt